Mercurial > repos > bgruening > deeptools_compute_matrix

comparison computeMatrix.xml @ 8:aee77c22123d draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2c5f94de9ddf6798e49b7e9c340c841ca2bfbcfe
author bgruening
date Tue, 20 Sep 2016 03:07:09 -0400
parents a842285199d9
children 6f334c8bd52f
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7:17d456f4051b 8:aee77c22123d
74 --maxThreshold $advancedOpt.maxThreshold 74 --maxThreshold $advancedOpt.maxThreshold
75 #end if 75 #end if
76 #if $advancedOpt.scale is not None and str($advancedOpt.scale) != '': 76 #if $advancedOpt.scale is not None and str($advancedOpt.scale) != '':
77 --scale $advancedOpt.scale 77 --scale $advancedOpt.scale
78 #end if 78 #end if
79
80 @ADVANCED_OPTS_GTF@
81
82 @blacklist@
83
79 #end if 84 #end if
80 ]]> 85 ]]>
81 </command> 86 </command>
82 <inputs> 87 <inputs>
83 88
204 numeric value will be skipped. The max threshold is useful to skip those 209 numeric value will be skipped. The max threshold is useful to skip those
205 few regions with very high read counts (e.g. major satellites) that may 210 few regions with very high read counts (e.g. major satellites) that may
206 bias the average values. (--maxThreshold)"/> 211 bias the average values. (--maxThreshold)"/>
207 <param name="scale" type="float" optional="True" label="Scaling factor" 212 <param name="scale" type="float" optional="True" label="Scaling factor"
208 help="If set, all values are multiplied by this number. (--scale)"/> 213 help="If set, all values are multiplied by this number. (--scale)"/>
214
215 <expand macro="gtf_options" />
216
217 <expand macro="blacklist" />
209 </when> 218 </when>
210 </conditional> 219 </conditional>
211 </inputs> 220 </inputs>
212 <outputs> 221 <outputs>
213 <data format="deeptools_compute_matrix_archive" name="outFileName" label="${tool.name} on ${on_string}: Matrix" /> 222 <data format="deeptools_compute_matrix_archive" name="outFileName" label="${tool.name} on ${on_string}: Matrix" />