Mercurial > repos > bgruening > deeptools_compute_matrix_operations
diff computeMatrixOperations.xml @ 17:be95d48dd27f draft
"planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 9308cb7fc910dba348d48fd0dce77a90264b7bdb"
| author | bgruening |
|---|---|
| date | Fri, 11 Feb 2022 15:57:22 +0000 |
| parents | 848ce8f81e6e |
| children | 7ef978dc1b8a |
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--- a/computeMatrixOperations.xml Sat Jan 25 04:55:34 2020 -0500 +++ b/computeMatrixOperations.xml Fri Feb 11 15:57:22 2022 +0000 @@ -71,6 +71,10 @@ -m $submodule.matrixFile -R '#echo "' '".join($files)#' -o $outFileName + #else if $submodule.command == "dataRange": + dataRange + -m $submodule.matrixFile + > $outFileTxt #end if ]]> </command> @@ -85,6 +89,7 @@ <option value="rbind">Bind matrices, top to bottom (rbind)</option> <option value="cbind">Bind matrices, left to right (cbind)</option> <option value="sort">Sort by region order in specified files (sort)</option> + <option value="dataRange">Returns the min, max, median, 10th and 90th percentile of the matrix values per sample (dataRange)</option> </param> <when value="info"> <param argument="matrixFile" format="deeptools_compute_matrix_archive" type="data" @@ -151,6 +156,11 @@ help="File, in BED format, containing the regions to plot."/> </repeat> </when> + + <when value="dataRange"> + <param argument="matrixFile" format="deeptools_compute_matrix_archive" type="data" + label="Matrix file from the computeMatrix tool" help=""/> + </when> </conditional> </inputs> <outputs> @@ -205,7 +215,8 @@ +----------------+--------------------------------------------------------------------------------------------------------------------------+ + sort | Sorts the given file so regions are in the order of occurence in the input BED/GTF file(s). | +----------------+--------------------------------------------------------------------------------------------------------------------------+ - ++ dataRange | Returns the min, max, median, 10th and 90th percentile of the matrix values per sample. | ++----------------+--------------------------------------------------------------------------------------------------------------------------+ These operations are useful when you want to run computeMatrix on multiple files (thereby keeping all of the values together) and later exclude regions/samples or add new ones. Another common use would be if you require the output of computeMatrix to be sorted to match the order of regions in the input file.