Mercurial > repos > bgruening > deeptools_correct_gc_bias
changeset 30:e479c7ca5570 draft default tip
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 4a4029b5c2e725b7cebc27217b76d23910508412
| author | bgruening |
|---|---|
| date | Wed, 27 Sep 2023 20:24:42 +0000 |
| parents | 5bffaa8354a1 |
| children | |
| files | deepTools_macros.xml test-data/heatmapper_result1.png test-data/heatmapper_result2.png test-data/plotCorrelation_result2.png test-data/plotFingerprint_quality_metrics.tabular test-data/profiler_result1.png |
| diffstat | 6 files changed, 13 insertions(+), 10 deletions(-) [+] |
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--- a/deepTools_macros.xml Thu Jun 01 14:45:20 2023 +0000 +++ b/deepTools_macros.xml Wed Sep 27 20:24:42 2023 +0000 @@ -1,8 +1,8 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@TOOL_VERSION@">3.5.2</token> - <token name="@GALAXY_VERSION@">20.01</token> + <token name="@TOOL_VERSION@">3.5.4</token> + <token name="@GALAXY_VERSION@">22.05</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">deeptools</requirement> @@ -441,12 +441,15 @@ <when value="No"> </when> <when value="Yes"> - <param argument="--labels" type="text" label="Sample Labels" help="Labels, separated by a space. If your labels themselves contain spaces then please enclose them in quotes (e.g., "sample 1" "sample 2")"> - <sanitizer> - <valid initial="string.printable"> - </valid> - </sanitizer> - </param> + <param argument="--labels" type="text" label="Sample Labels" help="Labels, separated by a space. If your labels themselves contain spaces then please enclose them in quotes (e.g., 'sample 1'; 'sample 2')"> + <sanitizer> + <valid initial="string.letters,string.digits,string.whitespace"> + <add value="'" /> + <add value="_" /> + </valid> + </sanitizer> + <validator type="regex">[A-Za-z0-9 =-_/+]+</validator> + </param> </when> </conditional> </xml>
--- a/test-data/plotFingerprint_quality_metrics.tabular Thu Jun 01 14:45:20 2023 +0000 +++ b/test-data/plotFingerprint_quality_metrics.tabular Wed Sep 27 20:24:42 2023 +0000 @@ -1,3 +1,3 @@ Sample AUC Synthetic AUC X-intercept Synthetic X-intercept Elbow Point Synthetic Elbow Point JS Distance Synthetic JS Distance % genome enriched diff. enrichment CHANCE divergence -bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 nan 0.2690044980681214 nan nan nan -bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 0.0 0.2690044980681214 0 0 0 +bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 nan 0.269004498068121 nan nan nan +bowtie2 test1.bam 0.00493632029863651 0.481650684757865 0.984443061605476 1.1531044350267195e-24 0.9849408836341008 0.5232688298112538 0.0 0.269004498068121 0 0 0