Mercurial > repos > bgruening > deeptools_multi_bam_summary

comparison multiBamSummary.xml @ 8:6f67a9da7fce draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2c5f94de9ddf6798e49b7e9c340c841ca2bfbcfe
author bgruening
date Mon, 19 Sep 2016 17:56:56 -0400
parents b319edc108a7
children d0800b8adbcb
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7:87d2c75884d9 8:6f67a9da7fce
34 --region '$region' 34 --region '$region'
35 #end if 35 #end if
36 36
37 #if $advancedOpt.showAdvancedOpt == "yes": 37 #if $advancedOpt.showAdvancedOpt == "yes":
38 @ADVANCED_OPTS_READ_PROCESSING@ 38 @ADVANCED_OPTS_READ_PROCESSING@
39 @ADVANCED_OPTS_GTF@
40 @blacklist@
39 #end if 41 #end if
40 ]]> 42 ]]>
41 </command> 43 </command>
42 44
43 <inputs> 45 <inputs>
70 72
71 <expand macro="region_limit_operation" /> 73 <expand macro="region_limit_operation" />
72 74
73 <expand macro="advancedOpt_scaffold"> 75 <expand macro="advancedOpt_scaffold">
74 <expand macro="read_processing_options" /> 76 <expand macro="read_processing_options" />
77 <expand macro="gtf_options" />
78 <expand macro="blacklist" />
75 </expand> 79 </expand>
76 80
77 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to file" help=""/> 81 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to file" help=""/>
78 82
79 </inputs> 83 </inputs>