Mercurial > repos > bgruening > deeptools_multi_bigwig_summary

comparison multiBigwigSummary.xml @ 8:6fdfeeef190a draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2c5f94de9ddf6798e49b7e9c340c841ca2bfbcfe
author bgruening
date Tue, 20 Sep 2016 02:58:58 -0400
parents 7b4732d497a3
children 1903a836f5ee
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7:8518a8e9ac82 8:6fdfeeef190a
33 #end if 33 #end if
34 34
35 #if str($region.value) != '': 35 #if str($region.value) != '':
36 --region '$region' 36 --region '$region'
37 #end if 37 #end if
38
39 #if $advancedOpt.showAdvancedOpt == "yes":
40 @ADVANCED_OPTS_GTF@
41 @blacklist@
42 #end if
38 ]]> 43 ]]>
39 </command> 44 </command>
40 45
41 <inputs> 46 <inputs>
42 <expand macro="multiple_input_bigwigs" /> 47 <expand macro="multiple_input_bigwigs" />
64 </when> 69 </when>
65 </conditional> 70 </conditional>
66 71
67 <expand macro="region_limit_operation" /> 72 <expand macro="region_limit_operation" />
68 <param argument="--outRawCounts" type="boolean" label="Save raw counts (scores) to file" help=""/> 73 <param argument="--outRawCounts" type="boolean" label="Save raw counts (scores) to file" help=""/>
74
75 <expand macro="advancedOpt_scaffold">
76 <expand macro="gtf_options" />
77 <expand macro="blacklist" />
78 </expand>
69 79
70 </inputs> 80 </inputs>
71 <outputs> 81 <outputs>
72 <data format="deeptools_coverage_matrix" name="outFile" label="${tool.name} on ${on_string}: correlation matrix" /> 82 <data format="deeptools_coverage_matrix" name="outFile" label="${tool.name} on ${on_string}: correlation matrix" />
73 <data format="tabular" name="outFileRawCounts" label="${tool.name} on ${on_string}: bin counts"> 83 <data format="tabular" name="outFileRawCounts" label="${tool.name} on ${on_string}: bin counts">