Mercurial > repos > bgruening > deeptools_plot_correlation
diff plotCorrelation.xml @ 20:68c06ccce7bf draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 38cfe39e3b3c82bbc0c2013e3068bd71adc3a9cb
| author | bgruening |
|---|---|
| date | Mon, 09 Jul 2018 18:23:50 -0400 |
| parents | 4e8b35fd2173 |
| children | e97f5de6b2da |
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--- a/plotCorrelation.xml Thu Apr 05 10:52:28 2018 -0400 +++ b/plotCorrelation.xml Mon Jul 09 18:23:50 2018 -0400 @@ -18,8 +18,11 @@ --plotHeight $plotting_type.plotHeight #else: --plotTitle '$plotting_type.plotTitle' - #if str($plotting_type.maxRange) != '': - --maxRange '$plotting_type.maxRange' + #if str($plotting_type.xRange) != '': + --xRange '$plotting_type.xRange' + #end if + #if str($plotting_type.yRange) != '': + --yRange '$plotting_type.yRange' #end if $plotting_type.log1p #end if @@ -47,9 +50,12 @@ </when> <when value="scatterplot"> <expand macro="plotTitle" /> - <param argument="--maxRange" type="integer" value="" optional="true" - label="Maximum Range" - help="Maximum (integer) value for the X and Y axes. The default scales these such that the full range of dots is displayed. If you specify --log1p, please ensure that this value is within the range it will produce." /> + <param argument="--xRange" type="text" value="" optional="true" + label="X axis range" + help="X axis range, the default scales these such that the full range of dots is displayed. The input should be two integers separated by a space." /> + <param argument="--yRange" type="text" value="" optional="true" + label="Y axis range" + help="Y axis range, the default scales these such that the full range of dots is displayed. The input should be two integers separated by a space." /> <param argument="--log1p" type="boolean" truevalue="--log1p" falsevalue="" label="Log transform" help="Plot the natural log of the scatter plot after adding 1. Note that this is ONLY for plotting, the correlation is unaffected." />