# HG changeset patch
# User bgruening
# Date 1550667426 18000
# Node ID 1d292ed311785f7723aeb23d46e17b077a9a4040
# Parent  a3aec82d6c7c07d2ace30befe68d69f9727b2fee
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3cefc7d64faa53ef9a4e5984c7b275fc47cbdaaf

diff -r a3aec82d6c7c -r 1d292ed31178 deepTools_macros.xml
--- a/deepTools_macros.xml	Tue Feb 19 09:57:12 2019 -0500
+++ b/deepTools_macros.xml	Wed Feb 20 07:57:06 2019 -0500
@@ -512,7 +512,7 @@
 
     <token name="@multiple_input_bigwigs@">
 <![CDATA[
-        #if $custom_labels_conditional.custom_labels_select == "Yes":
+        #if $custom_sample_labels_conditional.custom_labels_select == "Yes":
             #set custom_labels=labels
         #end if
         #set files=[]
@@ -533,7 +533,7 @@
                 #silent $labels.append("'%s'" % $identifier)
             #end for
         #end if
-        #if $custom_labels_conditional.custom_labels_select == "Yes":
+        #if $custom_sample_labels_conditional.custom_labels_select == "Yes":
             #set labels=custom_labels
         #end if
 ]]>
diff -r a3aec82d6c7c -r 1d292ed31178 test-data/estimateReadFiltering.txt
--- a/test-data/estimateReadFiltering.txt	Tue Feb 19 09:57:12 2019 -0500
+++ b/test-data/estimateReadFiltering.txt	Wed Feb 20 07:57:06 2019 -0500
@@ -1,3 +1,3 @@
 Sample	Total Reads	Mapped Reads	Alignments in blacklisted regions	Estimated mapped reads filtered	Below MAPQ	Missing Flags	Excluded Flags	Internally-determined Duplicates	Marked Duplicates	Singletons	Wrong strand
-paired_chr2L.bam	12644	12589	0	1395.9	4149.0	0.0	0.0	0.0	0.0	55.0	0.0
-paired_chr2L.bam	12644	12589	0	1395.9	4149.0	0.0	0.0	0.0	0.0	55.0	0.0
+paired_chr2L.bam	12644	12589	0	4192.0	4149.0	0.0	0.0	0.0	0.0	55.0	0.0
+paired_chr2L.bam	12644	12589	0	4192.0	4149.0	0.0	0.0	0.0	0.0	55.0	0.0