Mercurial > repos > bgruening > deeptools_plot_coverage
comparison plotCoverage.xml @ 8:6fc072c36dc9 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2c5f94de9ddf6798e49b7e9c340c841ca2bfbcfe
author | bgruening |
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date | Tue, 20 Sep 2016 03:02:08 -0400 |
parents | 6a077ef72dd4 |
children | 94b05ea80203 |
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7:70bf1a5592be | 8:6fc072c36dc9 |
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36 | 36 |
37 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": | 37 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": |
38 --plotTitle '$advancedOpt.plotTitle' | 38 --plotTitle '$advancedOpt.plotTitle' |
39 #end if | 39 #end if |
40 @ADVANCED_OPTS_READ_PROCESSING@ | 40 @ADVANCED_OPTS_READ_PROCESSING@ |
41 @blacklist@ | |
41 #end if | 42 #end if |
42 | 43 |
43 ]]> | 44 ]]> |
44 </command> | 45 </command> |
45 <inputs> | 46 <inputs> |
58 help="Number of samples taken from the genome to compute the scaling factors."/> | 59 help="Number of samples taken from the genome to compute the scaling factors."/> |
59 <expand macro="region_limit_operation" /> | 60 <expand macro="region_limit_operation" /> |
60 <expand macro="read_processing_options" /> | 61 <expand macro="read_processing_options" /> |
61 <expand macro="skipZeros" /> | 62 <expand macro="skipZeros" /> |
62 <expand macro="plotTitle" /> | 63 <expand macro="plotTitle" /> |
64 <expand macro="blacklist" /> | |
63 </when> | 65 </when> |
64 </conditional> | 66 </conditional> |
65 | 67 |
66 <expand macro="input_image_file_format" /> | 68 <expand macro="input_image_file_format" /> |
67 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to a file" help=""/> | 69 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to a file" help=""/> |