# HG changeset patch
# User bgruening
# Date 1534970876 14400
# Node ID 7373bed2be0f69c487009cb5d6218d7876940221
# Parent  2d9b459f3be22a1bed60a3475fef59f0b655adb4
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3024062b63fdc502b46e4f328083493c2274182a

diff -r 2d9b459f3be2 -r 7373bed2be0f deepTools_macros.xml
--- a/deepTools_macros.xml	Mon Jul 09 18:33:52 2018 -0400
+++ b/deepTools_macros.xml	Wed Aug 22 16:47:56 2018 -0400
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.1.0</token>
+    <token name="@WRAPPER_VERSION@">3.1.2.0</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.1.0">deeptools</requirement>
+            <requirement type="package" version="3.1.2">deeptools</requirement>
             <requirement type="package" version="1.7">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -216,7 +216,7 @@
             label="Use a metagene model"
             help="If set and a BED12 or GTF file or files is used to provide regions, only exons will be used. This is convenient for looking at coverage over mature mRNA transcripts or similar uses where introns should be ignored." />
         <param argument="--transcriptID" optional="True" value="transcript" type="text"
-            label="trascript designator"
+            label="transcript designator"
             help="When a GTF file is used to provide regions, only entries with this value as their feature (column 2) will be processed as transcripts. Default: transcript" />
         <param argument="--exonID" optional="True" value="exon" type="text"
             label="exon designator"
@@ -654,7 +654,7 @@
     </xml>
 
     <xml name="output_image_file_format">
-        <data format="png" name="outFileName" label="${tool.name} image">
+        <data format="png" name="outFileName" label="${tool.name} on ${on_string}: Image">
             <change_format>
                 <when input="output.outFileFormat" value="pdf" format="pdf" />
                 <when input="output.outFileFormat" value="svg" format="svg" />
@@ -665,7 +665,7 @@
     </xml>
 
     <xml name="output_image_file_format_not_nested">
-        <data format="png" name="outFileName" label="${tool.name} image">
+        <data format="png" name="outFileName" label="${tool.name} on ${on_string}: Image">
             <change_format>
                 <when input="outFileFormat" value="pdf" format="pdf" />
                 <when input="outFileFormat" value="svg" format="svg" />
diff -r 2d9b459f3be2 -r 7373bed2be0f plotCoverage.xml
--- a/plotCoverage.xml	Mon Jul 09 18:33:52 2018 -0400
+++ b/plotCoverage.xml	Wed Aug 22 16:47:56 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="deeptools_plot_coverage" name="plotCoverage" version="@WRAPPER_VERSION@.0">
+<tool id="deeptools_plot_coverage" name="plotCoverage" version="@WRAPPER_VERSION@.0" profile="18.01">
     <description>assesses the sequencing depth of BAM/CRAM files </description>
     <macros>
         <token name="@BINARY@">plotCoverage</token>
diff -r 2d9b459f3be2 -r 7373bed2be0f test-data/plotPCA_result1.png
Binary file test-data/plotPCA_result1.png has changed
diff -r 2d9b459f3be2 -r 7373bed2be0f test-data/plotPCA_result2.png
Binary file test-data/plotPCA_result2.png has changed