Mercurial > repos > bgruening > deeptools_plot_enrichment

comparison plotEnrichment.xml @ 9:084c9358ce76 draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit b1f975422b307927bbbe245d57609e9464d5d5c8-dirty
author bgruening
date Thu, 15 Feb 2018 06:04:43 -0500
parents a09adc02b84a
children 36de8f366d51
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8:5e6283701290 9:084c9358ce76
186 This tool determines read/fragment coverage of regions. The regions (e.g., exons, genes or peaks) can be specified in one or more BED or GTF files. For GTF files, the feature type is taken from column 3. For BED files, the file name is used. For BED files, the feature labels can be changed. 186 This tool determines read/fragment coverage of regions. The regions (e.g., exons, genes or peaks) can be specified in one or more BED or GTF files. For GTF files, the feature type is taken from column 3. For BED files, the file name is used. For BED files, the feature labels can be changed.
187 187
188 Output 188 Output
189 -------- 189 --------
190 190
191 The output file is a plot in the format specified. A table of the percentages can also be created. 191 The output file is a plot in the format specified. A table of the percentages and raw counts can also be created.
192 192
193 .. image:: $PATH_TO_IMAGES/plotEnrichment_output.png 193 .. image:: $PATH_TO_IMAGES/plotEnrichment_output.png
194 :width: 600 194 :width: 600
195 :height: 600 195 :height: 600
196 196