Mercurial > repos > bgruening > deeptools_plot_enrichment

comparison plotEnrichment.xml @ 17:d9114ef1c8a5 draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 9092b83f7ab4d7d57409f0cd9046d573209e9a83
author bgruening
date Wed, 29 May 2019 09:43:25 -0400
parents ef1a67ae6e13
children e65d16fb2724
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16:ce4ce3316f74 17:d9114ef1c8a5
27 #if str($region).strip() != "": 27 #if str($region).strip() != "":
28 --region '$region' 28 --region '$region'
29 #end if 29 #end if
30 30
31 #if $advancedOpt.showAdvancedOpt == "yes" 31 #if $advancedOpt.showAdvancedOpt == "yes"
32 #if $advancedOpt.attributeKey:
33 --attributeKey '$advancedOpt.attributeKey'
34 #end if
35
32 #if $advancedOpt.labels and str($advancedOpt.labels).strip() != "": 36 #if $advancedOpt.labels and str($advancedOpt.labels).strip() != "":
33 --labels $advancedOpt.labels 37 --labels $advancedOpt.labels
34 #end if 38 #end if
35 39
36 #if $advancedOpt.regionLabels and str($advancedOpt.regionLabels).strip() != "": 40 #if $advancedOpt.regionLabels and str($advancedOpt.regionLabels).strip() != "":
82 86
83 <expand macro="region_limit_operation" /> 87 <expand macro="region_limit_operation" />
84 <expand macro="input_image_file_format" /> 88 <expand macro="input_image_file_format" />
85 89
86 <expand macro="advancedOpt_scaffold"> 90 <expand macro="advancedOpt_scaffold">
91 <param argument="--attributeKey" type="text" optional="true" label="Optional attribute key"
92 help="Instead of deriving the feature label from the feature column, use the value of the given
93 attribute key. For example, the gene_biotype. Note that 'None' is used for BED files
94 or entries where the attributeKey is not found." />
95
87 <param argument="--plotHeight" type="integer" value="20" min="3" 96 <param argument="--plotHeight" type="integer" value="20" min="3"
88 label="Plot height" 97 label="Plot height"
89 help="Height in cm. The default for the plot height is 20 centimeters. The minimum value is 3 cm." /> 98 help="Height in cm. The default for the plot height is 20 centimeters. The minimum value is 3 cm." />
90 99
91 <param argument="--plotWidth" type="integer" value="20" min="1" 100 <param argument="--plotWidth" type="integer" value="20" min="1"