Mercurial > repos > bgruening > deeptools_plot_fingerprint

comparison plotFingerprint.xml @ 2:91b340ca9e92 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 7150f0c106abd56920767518cc331ef6e4e7f439
author bgruening
date Thu, 18 Feb 2016 11:44:30 -0500
parents a6d0ddc266bf
children d0c03d57e471
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1:a6d0ddc266bf 2:91b340ca9e92
142 :width: 600 142 :width: 600
143 :height: 450 143 :height: 450
144 144
145 ----------------------------- 145 -----------------------------
146 146
147 Background 147 Theoretical Background
148 -------------- 148 ----------------------
149 149
150 The tool first samples indexed BAM files and counts all reads overlapping a window (bin) of the specified length. 150 The tool first samples indexed BAM files and counts all reads overlapping a window (bin) of the specified length.
151 These counts are then sorted according to their rank (the bin with the highest number of reads has the highest rank) 151 These counts are then sorted according to their rank (the bin with the highest number of reads has the highest rank)
152 and the cumulative sum of read counts are plotted. An ideal input (control) with a uniform distribution of reads alignments 152 and the cumulative sum of read counts are plotted. An ideal input (control) with a uniform distribution of reads alignments
153 result in a diagonal line. A very specific and strong ChIP enrichment, on the other hand, would result in a large portion 153 result in a diagonal line. A very specific and strong ChIP enrichment, on the other hand, would result in a large portion