Mercurial > repos > bgruening > deeptools_plot_heatmap

diff plotHeatmap.xml @ 23:751adcc1ce82 draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6507b14607984c6f48d9866922a17132de4bb54d
author bgruening
date Tue, 19 Feb 2019 10:08:15 -0500
parents 46992aa30bd6
children 42cb23d80271
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--- a/plotHeatmap.xml	Fri Sep 21 03:17:42 2018 -0400
+++ b/plotHeatmap.xml	Tue Feb 19 10:08:15 2019 -0500
@@ -42,6 +42,8 @@
                     --averageTypeSummaryPlot '$advancedOpt.averageTypeSummaryPlot'
                 #end if
 
+                --plotType '$advancedOpt.plotType'
+
                 #if str($advancedOpt.missingDataColor.value) != "None":
                     --missingDataColor '$advancedOpt.missingDataColor'
                 #end if
@@ -98,6 +100,8 @@
                     --plotTitle '$advancedOpt.plotTitle'
                 #end if
 
+                --legendLocation '$advancedOpt.legendLocation'
+
                 --labelRotation '$advancedOpt.labelRotation'
 
                 $advancedOpt.perGroup
@@ -136,7 +140,12 @@
                     <option value="sum">sum</option>
                     <option value="std">std</option>
                 </param>
-
+                <param argument="--plotType" type="select" label="Type of summary plot">
+                    <option value="lines">plot the profile line based on the statistic selected above.</option>
+                    <option value="fill">fills the region between zero and the profile.</option>
+                    <option value="se">color the region between the profile and the standard error.</option>
+                    <option value="std">color the region between the profile and the standard deviation.</option>
+                </param>
                 <param argument="--missingDataColor" type="text" value="black" optional="true" label="Missing data color"
                     help="If 'Represent missing data as zero' is not set, such cases will be colored in black by default.
                     By using this parameter a different color can be set. A value between 0 and 1 will be used for a gray scale (black is 0).
@@ -206,6 +215,7 @@
                           For example, label_1 &quot;label 2&quot;" />
 
                 <expand macro="plotTitle" />
+                <expand macro="legendLocation" />
                 <expand macro="labelRotation" />
                 <param argument="--perGroup" type="boolean" truevalue="--perGroup" falsevalue=""
                     label="Make one plot per group of regions"