Mercurial > repos > bgruening > deeptools_plot_pca
annotate tool_dependencies.xml.orig @ 4:0193cb4d153c draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c-dirty
author | bgruening |
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date | Thu, 10 Mar 2016 03:24:43 -0500 |
parents | 47bf2e1f065b |
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47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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1 <?xml version='1.0' encoding='utf-8'?> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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2 <tool_dependency> |
47bf2e1f065b
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3 <package name="numpy" version="1.9"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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4 <repository name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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5 </package> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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6 <package name="pybigwig" version="0.2.4"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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7 <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc" prior_installation_required="True"/> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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8 </package> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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9 <package name="matplotlib" version="1.4"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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10 <repository name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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11 </package> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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12 <package name="scipy" version="0.14"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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13 <repository name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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14 </package> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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15 <<<<<<< HEAD |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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16 <package name="deepTools" version="2.0.1"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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17 <repository name="package_python_2_7_deeptools_2_0_1" owner="iuc"/> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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18 ======= |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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19 <package name="pysam" version="0.8.3"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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20 <repository name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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21 </package> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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22 <package name="bx-python" version="0.7.2"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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23 <repository name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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24 </package> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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25 <package name="python" version="2.7.10"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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26 <repository name="package_python_2_7_10" owner="iuc" prior_installation_required="True" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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27 >>>>>>> d56067f86089e75354a2fad266002db3730766d9 |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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28 </package> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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29 <package name="deepTools" version="2.1.0"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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30 <install version="1.0"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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31 <actions> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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32 <action type="setup_python_environment"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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33 <repository name="package_python_2_7_10" owner="iuc"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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34 <package name="python" version="2.7.10" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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35 </repository> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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36 <repository name="package_python_2_7_pysam_0_8_3" owner="iuc"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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37 <package name="pysam" version="0.8.3" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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38 </repository> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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39 <repository name="package_python_2_7_numpy_1_9" owner="iuc"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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40 <package name="numpy" version="1.9" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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41 </repository> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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42 <repository name="package_python_2_7_matplotlib_1_4" owner="iuc"> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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43 <package name="matplotlib" version="1.4" /> |
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44 </repository> |
47bf2e1f065b
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45 <repository name="package_python_2_7_scipy_0_14" owner="iuc"> |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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46 <package name="scipy" version="0.14" /> |
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47 </repository> |
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48 <repository name="package_python_2_7_bx_python_0_7" owner="iuc"> |
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49 <package name="bx-python" version="0.7.2" /> |
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50 </repository> |
47bf2e1f065b
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51 <repository name="package_python_2_7_10_pybigwig_0_2_4" owner="iuc"> |
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52 <package name="pybigwig" version="0.2.4" /> |
47bf2e1f065b
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit fef8b344925620444d93d8159c0b2731a5777920
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53 </repository> |
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54 <package sha256sum="3bf835afde02cd5247198db3e01f690899e1fdb86e1821a83ac940d807baa857">https://pypi.python.org/packages/source/d/deepTools/deepTools-2.1.0.tar.gz</package> |
47bf2e1f065b
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55 </action> |
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56 |
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57 <action type="set_environment"> |
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58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
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59 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
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60 <environment_variable name="DEEPTOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable> |
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61 <environment_variable name="DEEPTOOLS_PYTHONPATH" action="set_to">$INSTALL_DIR</environment_variable> |
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62 <environment_variable name="DEEPTOOLS_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable> |
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63 <!-- libpng lib path --> |
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64 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> |
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65 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> |
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66 <!-- disable the config file of deepTools --> |
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67 <environment_variable name="DEEP_TOOLS_NO_CONFIG" action="set_to">TRUE</environment_variable> |
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68 </action> |
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69 </actions> |
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70 </install> |
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71 <readme> |
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72 Installation of deepTools from Fidel Ramirez. |
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73 https://github.com/fidelram/deepTools |
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74 </readme> |
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75 </package> |
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76 </tool_dependency> |