Mercurial > repos > bgruening > deeptools_plot_pca
comparison deepTools_macros.xml @ 24:4d678170d29b draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57
author | bgruening |
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date | Tue, 02 Apr 2019 08:15:25 -0400 |
parents | ef17dbcfa4a8 |
children | aa200e4f3939 |
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23:ef17dbcfa4a8 | 24:4d678170d29b |
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1 <macros> | 1 <macros> |
2 | 2 |
3 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> | 3 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> |
4 <token name="@WRAPPER_VERSION@">3.2.0.0</token> | 4 <token name="@WRAPPER_VERSION@">3.2.1.0</token> |
5 <xml name="requirements"> | 5 <xml name="requirements"> |
6 <requirements> | 6 <requirements> |
7 <requirement type="package" version="3.2.0">deeptools</requirement> | 7 <requirement type="package" version="3.2.1">deeptools</requirement> |
8 <requirement type="package" version="1.9">samtools</requirement> | 8 <requirement type="package" version="1.9">samtools</requirement> |
9 </requirements> | 9 </requirements> |
10 <expand macro="stdio" /> | 10 <expand macro="stdio" /> |
11 <version_command>@BINARY@ --version</version_command> | 11 <version_command>@BINARY@ --version</version_command> |
12 </xml> | 12 </xml> |
646 regions as having a value of zero. The decision to | 646 regions as having a value of zero. The decision to |
647 skip non-covered regions depends on the interpretation | 647 skip non-covered regions depends on the interpretation |
648 of the data. Non-covered regions may represent, for | 648 of the data. Non-covered regions may represent, for |
649 example, repetitive regions that should be ignored. | 649 example, repetitive regions that should be ignored. |
650 (default: False)" /> | 650 (default: False)" /> |
651 </xml> | |
652 | |
653 <xml name="skipZeroOverZero"> | |
654 <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage" | |
655 help="Skip bins where BOTH files lack coverage."> | |
656 <option value="" selected="true">No</option> | |
657 <option value="--skipZeroOverZero">Yes, skip them.</option> | |
658 </param> | |
651 </xml> | 659 </xml> |
652 | 660 |
653 <xml name="exactScaling"> | 661 <xml name="exactScaling"> |
654 <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False" | 662 <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False" |
655 label="Compute an exact scaling factor" | 663 label="Compute an exact scaling factor" |