Mercurial > repos > bgruening > deeptools_plot_pca

comparison deepTools_macros.xml @ 20:aca788d8e71d draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 38cfe39e3b3c82bbc0c2013e3068bd71adc3a9cb
author bgruening
date Mon, 09 Jul 2018 18:41:04 -0400
parents d9376d223fad
children 93ce2662f917
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19:d9376d223fad 20:aca788d8e71d
1 <macros> 1 <macros>
2 2
3 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> 3 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
4 <token name="@WRAPPER_VERSION@">3.0.2</token> 4 <token name="@WRAPPER_VERSION@">3.1.0</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="3.0.2">deeptools</requirement> 7 <requirement type="package" version="3.1.0">deeptools</requirement>
8 <requirement type="package" version="1.7">samtools</requirement> 8 <requirement type="package" version="1.7">samtools</requirement>
9 </requirements> 9 </requirements>
10 <expand macro="stdio" /> 10 <expand macro="stdio" />
11 <version_command>@BINARY@ --version</version_command> 11 <version_command>@BINARY@ --version</version_command>
12 </xml> 12 </xml>
599 regions as having a value of zero. The decision to 599 regions as having a value of zero. The decision to
600 skip non-covered regions depends on the interpretation 600 skip non-covered regions depends on the interpretation
601 of the data. Non-covered regions may represent, for 601 of the data. Non-covered regions may represent, for
602 example, repetitive regions that should be ignored. 602 example, repetitive regions that should be ignored.
603 (default: False)" /> 603 (default: False)" />
604 </xml>
605
606 <xml name="exactScaling">
607 <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False"
608 label="Compute an exact scaling factor"
609 help="Compute an exact scaling factor rather than one based on
610 sampled reads. This is only useful in cases where you are
611 filtering some alignments out AND this are both rare and
612 tend to clump together in the genome. In such cases the
613 region-based sampling employed by deepTools would produce
614 inaccurate scaling factors. Note that this option results
615 in the process taking significantly more time to complete." />
604 </xml> 616 </xml>
605 617
606 <xml name="input_save_matrix_values"> 618 <xml name="input_save_matrix_values">
607 <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/> 619 <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/>
608 </xml> 620 </xml>