Mercurial > repos > bgruening > deeptools_plot_profile

comparison plotProfiler.xml @ 17:4f53adc96238 draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit b1f975422b307927bbbe245d57609e9464d5d5c8-dirty
author bgruening
date Thu, 15 Feb 2018 06:43:06 -0500
parents 6178c2e448eb
children 18ab9a21ed30
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16:6f1f8f784e1c 17:4f53adc96238
52 #end if 52 #end if
53 53
54 #if str($advancedOpt.colors).strip() != "": 54 #if str($advancedOpt.colors).strip() != "":
55 --colors #echo ' '.join( ["'%s'" % $color for $color in $advancedOpt.colors.split()] )# 55 --colors #echo ' '.join( ["'%s'" % $color for $color in $advancedOpt.colors.split()] )#
56 #end if 56 #end if
57
58 --labelRotation '$advancedOpt.labelRotation'
57 59
58 $advancedOpt.perGroup 60 $advancedOpt.perGroup
59 61
60 #if $advancedOpt.yMin: 62 #if $advancedOpt.yMin:
61 --yMin $advancedOpt.yMin 63 --yMin $advancedOpt.yMin
157 help="Color names and html hex strings (e.g. #eeff22) are accepted. 159 help="Color names and html hex strings (e.g. #eeff22) are accepted.
158 The color names should be separated by spaces. (--colors red blue green)"> 160 The color names should be separated by spaces. (--colors red blue green)">
159 <validator type="expression" 161 <validator type="expression"
160 message="Only numbers, digits, '#' and spaces are allowed.">all(c in ' #abcdefghijklmnopqrstuvwxyz0123456789' for c in value)</validator> 162 message="Only numbers, digits, '#' and spaces are allowed.">all(c in ' #abcdefghijklmnopqrstuvwxyz0123456789' for c in value)</validator>
161 </param> 163 </param>
164 <expand macro="labelRotation" />
162 165
163 <param argument="--perGroup" type="boolean" truevalue="--perGroup" falsevalue="" 166 <param argument="--perGroup" type="boolean" truevalue="--perGroup" falsevalue=""
164 label="Make one plot per group of regions" 167 label="Make one plot per group of regions"
165 help="The default is to make one plot per bigWig file, i.e., all samples next to each other. Choosing this option will make one plot per group of regions. " /> 168 help="The default is to make one plot per bigWig file, i.e., all samples next to each other. Choosing this option will make one plot per group of regions. " />
166 169
180 <outputs> 183 <outputs>
181 <expand macro="output_image_file_format" /> 184 <expand macro="output_image_file_format" />
182 <expand macro="output_graphic_outputs" /> 185 <expand macro="output_graphic_outputs" />
183 186
184 <data format="tabular" name="output_outFileNameData" label="${tool.name} on ${on_string}: Underlying data"> 187 <data format="tabular" name="output_outFileNameData" label="${tool.name} on ${on_string}: Underlying data">
185 <filter>outFileNameData</filter> 188 <filter>advancedOpt['showAdvancedOpt'] == "yes" and advancedOpt['outFileNameData'] is True</filter>
186 </data> 189 </data>
187 190
188 </outputs> 191 </outputs>
189 <tests> 192 <tests>
190 <test> 193 <test>