Mercurial > repos > bgruening > deeptools_plot_profile

comparison plotProfiler.xml @ 22:d948f3c4e3f7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6507b14607984c6f48d9866922a17132de4bb54d
author bgruening
date Tue, 19 Feb 2019 09:54:00 -0500
parents 0cd2331b6e4f
children 10301d137111
comparison
equal deleted inserted replaced
21:0cd2331b6e4f 22:d948f3c4e3f7
52 #end if 52 #end if
53 53
54 #if str($advancedOpt.colors).strip() != "": 54 #if str($advancedOpt.colors).strip() != "":
55 --colors #echo ' '.join( ["'%s'" % $color for $color in $advancedOpt.colors.split()] )# 55 --colors #echo ' '.join( ["'%s'" % $color for $color in $advancedOpt.colors.split()] )#
56 #end if 56 #end if
57
58 --legendLocation '$advancedOpt.legendLocation'
57 59
58 --labelRotation '$advancedOpt.labelRotation' 60 --labelRotation '$advancedOpt.labelRotation'
59 61
60 $advancedOpt.perGroup 62 $advancedOpt.perGroup
61 63
133 The option "overlapped_lines" plots each region's value, one on top of 135 The option "overlapped_lines" plots each region's value, one on top of
134 the other."> 136 the other.">
135 <option value="lines" selected="true">lines</option> 137 <option value="lines" selected="true">lines</option>
136 <option value="fill">fill</option> 138 <option value="fill">fill</option>
137 <option value="se">add standard error</option> 139 <option value="se">add standard error</option>
140 <option value="std">add standard deviation</option>
138 <option value="overlapped_lines">overlapped lines</option> 141 <option value="overlapped_lines">overlapped lines</option>
139 <option value="heatmap">heatmap</option> 142 <option value="heatmap">heatmap</option>
140 </param> 143 </param>
141 <param argument="--samplesLabel" type="text" size="30" 144 <param argument="--samplesLabel" type="text" size="30"
142 label="Labels for the samples (each bigwig) plotted" 145 label="Labels for the samples (each bigwig) plotted"
159 help="Color names and html hex strings (e.g. #eeff22) are accepted. 162 help="Color names and html hex strings (e.g. #eeff22) are accepted.
160 The color names should be separated by spaces. (--colors red blue green)"> 163 The color names should be separated by spaces. (--colors red blue green)">
161 <validator type="expression" 164 <validator type="expression"
162 message="Only numbers, digits, '#' and spaces are allowed.">all(c in ' #abcdefghijklmnopqrstuvwxyz0123456789' for c in value)</validator> 165 message="Only numbers, digits, '#' and spaces are allowed.">all(c in ' #abcdefghijklmnopqrstuvwxyz0123456789' for c in value)</validator>
163 </param> 166 </param>
167 <expand macro="legendLocation" />
164 <expand macro="labelRotation" /> 168 <expand macro="labelRotation" />
165 169
166 <param argument="--perGroup" type="boolean" truevalue="--perGroup" falsevalue="" 170 <param argument="--perGroup" type="boolean" truevalue="--perGroup" falsevalue=""
167 label="Make one plot per group of regions" 171 label="Make one plot per group of regions"
168 help="The default is to make one plot per bigWig file, i.e., all samples next to each other. Choosing this option will make one plot per group of regions. " /> 172 help="The default is to make one plot per bigWig file, i.e., all samples next to each other. Choosing this option will make one plot per group of regions. " />