Mercurial > repos > bgruening > deeptools_plot_profile
comparison plotProfiler.xml @ 22:d948f3c4e3f7 draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6507b14607984c6f48d9866922a17132de4bb54d
author | bgruening |
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date | Tue, 19 Feb 2019 09:54:00 -0500 |
parents | 0cd2331b6e4f |
children | 10301d137111 |
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21:0cd2331b6e4f | 22:d948f3c4e3f7 |
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52 #end if | 52 #end if |
53 | 53 |
54 #if str($advancedOpt.colors).strip() != "": | 54 #if str($advancedOpt.colors).strip() != "": |
55 --colors #echo ' '.join( ["'%s'" % $color for $color in $advancedOpt.colors.split()] )# | 55 --colors #echo ' '.join( ["'%s'" % $color for $color in $advancedOpt.colors.split()] )# |
56 #end if | 56 #end if |
57 | |
58 --legendLocation '$advancedOpt.legendLocation' | |
57 | 59 |
58 --labelRotation '$advancedOpt.labelRotation' | 60 --labelRotation '$advancedOpt.labelRotation' |
59 | 61 |
60 $advancedOpt.perGroup | 62 $advancedOpt.perGroup |
61 | 63 |
133 The option "overlapped_lines" plots each region's value, one on top of | 135 The option "overlapped_lines" plots each region's value, one on top of |
134 the other."> | 136 the other."> |
135 <option value="lines" selected="true">lines</option> | 137 <option value="lines" selected="true">lines</option> |
136 <option value="fill">fill</option> | 138 <option value="fill">fill</option> |
137 <option value="se">add standard error</option> | 139 <option value="se">add standard error</option> |
140 <option value="std">add standard deviation</option> | |
138 <option value="overlapped_lines">overlapped lines</option> | 141 <option value="overlapped_lines">overlapped lines</option> |
139 <option value="heatmap">heatmap</option> | 142 <option value="heatmap">heatmap</option> |
140 </param> | 143 </param> |
141 <param argument="--samplesLabel" type="text" size="30" | 144 <param argument="--samplesLabel" type="text" size="30" |
142 label="Labels for the samples (each bigwig) plotted" | 145 label="Labels for the samples (each bigwig) plotted" |
159 help="Color names and html hex strings (e.g. #eeff22) are accepted. | 162 help="Color names and html hex strings (e.g. #eeff22) are accepted. |
160 The color names should be separated by spaces. (--colors red blue green)"> | 163 The color names should be separated by spaces. (--colors red blue green)"> |
161 <validator type="expression" | 164 <validator type="expression" |
162 message="Only numbers, digits, '#' and spaces are allowed.">all(c in ' #abcdefghijklmnopqrstuvwxyz0123456789' for c in value)</validator> | 165 message="Only numbers, digits, '#' and spaces are allowed.">all(c in ' #abcdefghijklmnopqrstuvwxyz0123456789' for c in value)</validator> |
163 </param> | 166 </param> |
167 <expand macro="legendLocation" /> | |
164 <expand macro="labelRotation" /> | 168 <expand macro="labelRotation" /> |
165 | 169 |
166 <param argument="--perGroup" type="boolean" truevalue="--perGroup" falsevalue="" | 170 <param argument="--perGroup" type="boolean" truevalue="--perGroup" falsevalue="" |
167 label="Make one plot per group of regions" | 171 label="Make one plot per group of regions" |
168 help="The default is to make one plot per bigWig file, i.e., all samples next to each other. Choosing this option will make one plot per group of regions. " /> | 172 help="The default is to make one plot per bigWig file, i.e., all samples next to each other. Choosing this option will make one plot per group of regions. " /> |