Mercurial > repos > bgruening > deeptools_plot_profile

comparison tool-data/lastz_seqs.loc.sample @ 0:e4ad262c1321 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee-dirty
author bgruening
date Mon, 25 Jan 2016 20:27:28 -0500
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-1:000000000000 0:e4ad262c1321
1 #This is a sample file distributed with Galaxy that enables tools
2 #to use a directory of 2bit genome files for use with deepTools.
3 #This file is named lastz_seqs.loc file to make use of an already existing loc
4 #file from the lastz tool that is created by the twobit data-manager.
5 #You will need to supply these files and then create a lastz_seqs.loc file
6 #similar to this one (store it in this directory) that points to
7 #the directories in which those files are stored. The lastz_seqs.loc
8 #file has this format:
9 #
10 #<unique_build_id> <display_name> <file_path>
11 #
12 #So, for example, if your lastz_seqs.loc began like this:
13 #
14 #hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg18.2bit
15 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit
16 #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.2bit
17 #
18 #then your /depot/data2/galaxy/twobit/ directory
19 #would need to contain the following 2bit files:
20 #
21 #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit
22 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit
23 #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit
24 #
25 #Your lastz_seqs.loc file should include an entry per line for
26 #each file you have stored that you want to be available. Note that
27 #your files should all have the extension '2bit'.
28 #
29 #Please note that the <unique_build_id> is also used as "Species name abbreviation".