# HG changeset patch
# User bgruening
# Date 1520020705 18000
# Node ID 18ab9a21ed300ec398faff6b65a3e4390b74f34b
# Parent  4f53adc96238aa0662e06428e510301b9dc11ff7
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 72ae8f62333aa38d1c63034ddb37184a0f72c64e-dirty

diff -r 4f53adc96238 -r 18ab9a21ed30 deepTools_macros.xml
--- a/deepTools_macros.xml	Thu Feb 15 06:43:06 2018 -0500
+++ b/deepTools_macros.xml	Fri Mar 02 14:58:25 2018 -0500
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.0.0</token>
+    <token name="@WRAPPER_VERSION@">3.0.1</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.0.0">deeptools</requirement>
+            <requirement type="package" version="3.0.1">deeptools</requirement>
             <requirement type="package" version="1.7">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -456,7 +456,6 @@
             #for $counter, $f in enumerate($multibam_conditional.multibam_repeats):
                 #set identifier = re.sub('[^\.\s\w\-]', '_', str($f.bamfiles.element_identifier))
                 ln -s "${f.bamfiles}" "./${counter}.bam" &&
-                ln -s "${f.bamfiles.metadata.bam_index}" "./${counter}.bam.bai" &&
                 #if $f.bamfiles.ext == 'bam':
                     ln -s '${f.bamfiles.metadata.bam_index}' './${counter}.bam.bai' &&
                 #else:
diff -r 4f53adc96238 -r 18ab9a21ed30 plotProfiler.xml
--- a/plotProfiler.xml	Thu Feb 15 06:43:06 2018 -0500
+++ b/plotProfiler.xml	Fri Mar 02 14:58:25 2018 -0500
@@ -59,10 +59,10 @@
 
                 $advancedOpt.perGroup
 
-                #if $advancedOpt.yMin:
+                #if str($advancedOpt.yMin):
                     --yMin $advancedOpt.yMin
                 #end if
-                #if $advancedOpt.yMax:
+                #if str($advancedOpt.yMax):
                     --yMax $advancedOpt.yMax
                 #end if