Mercurial > repos > bgruening > diamond
comparison test-data/diamond_results.xml @ 6:64be1ac21109 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diamond commit 2f6d48e1d2161d03411d9fbb4fc3d16f0fa3d2e1
author | bgruening |
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date | Thu, 27 Sep 2018 06:30:30 -0400 |
parents | |
children | 62c9df8382c2 |
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5:3c6b132b154a | 6:64be1ac21109 |
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1 <?xml version="1.0"?> | |
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> | |
3 <BlastOutput> | |
4 <BlastOutput_program>blastp</BlastOutput_program> | |
5 <BlastOutput_version>diamond 0.9.21</BlastOutput_version> | |
6 <BlastOutput_reference>Benjamin Buchfink, Xie Chao, and Daniel Huson (2015), "Fast and sensitive protein alignment using DIAMOND", Nature Methods 12:59-60.</BlastOutput_reference> | |
7 <BlastOutput_db>.dmnd</BlastOutput_db> | |
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | |
9 <BlastOutput_query-def>sequence</BlastOutput_query-def> | |
10 <BlastOutput_query-len>283</BlastOutput_query-len> | |
11 <BlastOutput_param> | |
12 <Parameters> | |
13 <Parameters_matrix>blosum62</Parameters_matrix> | |
14 <Parameters_expect>0.001</Parameters_expect> | |
15 <Parameters_gap-open>11</Parameters_gap-open> | |
16 <Parameters_gap-extend>1</Parameters_gap-extend> | |
17 <Parameters_filter>F</Parameters_filter> | |
18 </Parameters> | |
19 </BlastOutput_param> | |
20 <BlastOutput_iterations> | |
21 <Iteration> | |
22 <Iteration_iter-num>1</Iteration_iter-num> | |
23 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
24 <Iteration_query-def>sequence</Iteration_query-def> | |
25 <Iteration_query-len>283</Iteration_query-len> | |
26 <Iteration_hits> | |
27 <Hit> | |
28 <Hit_num>1</Hit_num> | |
29 <Hit_id>gi|5524211|gb|AAD44166.1|</Hit_id> | |
30 <Hit_def></Hit_def> | |
31 <Hit_accession>AAD44166.1</Hit_accession> | |
32 <Hit_len>284</Hit_len> | |
33 <Hit_hsps> | |
34 <Hsp> | |
35 <Hsp_num>1</Hsp_num> | |
36 <Hsp_bit-score>541.2</Hsp_bit-score> | |
37 <Hsp_score>1393</Hsp_score> | |
38 <Hsp_evalue>2.0e-158</Hsp_evalue> | |
39 <Hsp_query-from>1</Hsp_query-from> | |
40 <Hsp_query-to>284</Hsp_query-to> | |
41 <Hsp_hit-from>1</Hsp_hit-from> | |
42 <Hsp_hit-to>284</Hsp_hit-to> | |
43 <Hsp_query-frame>0</Hsp_query-frame> | |
44 <Hsp_hit-frame>0</Hsp_hit-frame> | |
45 <Hsp_identity>283</Hsp_identity> | |
46 <Hsp_positive>283</Hsp_positive> | |
47 <Hsp_gaps>1</Hsp_gaps> | |
48 <Hsp_align-len>284</Hsp_align-len> | |
49 <Hsp_qseq>LCLYTHIGRNIYYGSYLYSETWNTGIMLLLITMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGTNLVEWIWGGFSVDKATLNRFFAFHFIL-FTMVALAGVHLTFLHETGSNNPLGLTSDSDKIPFHPYYTIKDFLGLXXXXXXXXXXXXXSPDMLGDPDNHMPADPLNTPLHIKPEWYFLFAYAILRSVPNKLGGVLALFLSIVILGLMPFLHTSKHRSMMLRPLSQALFWTLTMDLLTLTWIGSQPVEYPYTIIGQMASILYFSIILAFLPIAGXIENY</Hsp_qseq> | |
50 <Hsp_hseq>LCLYTHIGRNIYYGSYLYSETWNTGIMLLLITMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGTNLVEWIWGGFSVDKATLNRFFAFHFILPFTMVALAGVHLTFLHETGSNNPLGLTSDSDKIPFHPYYTIKDFLGLXXXXXXXXXXXXXSPDMLGDPDNHMPADPLNTPLHIKPEWYFLFAYAILRSVPNKLGGVLALFLSIVILGLMPFLHTSKHRSMMLRPLSQALFWTLTMDLLTLTWIGSQPVEYPYTIIGQMASILYFSIILAFLPIAGXIENY</Hsp_hseq> | |
51 <Hsp_midline>LCLYTHIGRNIYYGSYLYSETWNTGIMLLLITMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGTNLVEWIWGGFSVDKATLNRFFAFHFIL FTMVALAGVHLTFLHETGSNNPLGLTSDSDKIPFHPYYTIKDFLGLXXXXXXXXXXXXXSPDMLGDPDNHMPADPLNTPLHIKPEWYFLFAYAILRSVPNKLGGVLALFLSIVILGLMPFLHTSKHRSMMLRPLSQALFWTLTMDLLTLTWIGSQPVEYPYTIIGQMASILYFSIILAFLPIAGXIENY</Hsp_midline> | |
52 </Hsp> | |
53 </Hit_hsps> | |
54 </Hit> | |
55 </Iteration_hits> | |
56 <Iteration_stat> | |
57 <Statistics> | |
58 <Statistics_db-num>2</Statistics_db-num> | |
59 <Statistics_db-len>568</Statistics_db-len> | |
60 <Statistics_hsp-len>0</Statistics_hsp-len> | |
61 <Statistics_eff-space>0</Statistics_eff-space> | |
62 <Statistics_kappa>0.041000</Statistics_kappa> | |
63 <Statistics_lambda>0.267000</Statistics_lambda> | |
64 <Statistics_entropy>0</Statistics_entropy> | |
65 </Statistics> | |
66 </Iteration_stat> | |
67 </Iteration> | |
68 </BlastOutput_iterations> | |
69 </BlastOutput> |