Mercurial > repos > bgruening > diamond

comparison diamond_view.xml @ 9:f921014aba5a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond commit 828c844036743151594e57cc19811f4c8d9179b3"
author iuc
date Sat, 27 Nov 2021 09:48:10 +0000
parents 54f751e413f4
children 1e3323a44643
comparison
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8:54f751e413f4 9:f921014aba5a
1 <tool id="bg_diamond_view" name="Diamond view" version="@VERSION@" profile="19.01"> 1 <tool id="bg_diamond_view" name="Diamond view" version="@TOOL_VERSION@.1" profile="19.01">
2 <description>generate formatted output from DAA files</description> 2 <description>generate formatted output from DAA files</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
27 </inputs> 27 </inputs>
28 <outputs> 28 <outputs>
29 <expand macro="output_macro" /> 29 <expand macro="output_macro" />
30 </outputs> 30 </outputs>
31 <tests> 31 <tests>
32 <test> 32 <test expect_num_outputs="1">
33 <param name="daa" ftype="daa" value="diamond_results.daa" /> 33 <param name="daa" ftype="daa" value="diamond_results.daa" />
34 <conditional name="output"> 34 <conditional name="output">
35 <param name="outfmt" value="5"/> 35 <param name="outfmt" value="5"/>
36 </conditional> 36 </conditional>
37 <conditional name="hit_filter"> 37 <conditional name="hit_filter">
38 <param name="hit_filter_select" value="max"/> 38 <param name="hit_filter_select" value="max"/>
39 <param name="max_target_seqs" value="1" /> 39 <param name="max_target_seqs" value="1" />
40 </conditional> 40 </conditional>
41 <output name="blast_tabular" file="diamond_results.xml"/> 41 <output name="blast_tabular" file="diamond_results.xml"/>
42 </test> 42 </test>
43 <test> 43 <test expect_num_outputs="1">
44 <param name="daa" ftype="daa" value="diamond_results.daa" /> 44 <param name="daa" ftype="daa" value="diamond_results.daa" />
45 <conditional name="output"> 45 <conditional name="output">
46 <param name="outfmt" value="6"/> 46 <param name="outfmt" value="6"/>
47 <param name="fields" value="qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,sstart,send,evalue,bitscore,cigar,scovhsp"/> 47 <param name="fields" value="qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,sstart,send,evalue,bitscore,cigar,scovhsp"/>
48 </conditional> 48 </conditional>
49 <output name="blast_tabular" file="diamond_view_results.tabular"/> 49 <output name="blast_tabular" file="diamond_view_results.tabular"/>
50 </test> 50 </test>
51 <test> 51 <test expect_num_outputs="1">
52 <param name="daa" ftype="daa" value="diamond_results.daa" /> 52 <param name="daa" ftype="daa" value="diamond_results.daa" />
53 <conditional name="output"> 53 <conditional name="output">
54 <param name="outfmt" value="101"/> 54 <param name="outfmt" value="101"/>
55 </conditional> 55 </conditional>
56 <conditional name="hit_filter"> 56 <conditional name="hit_filter">