Mercurial > repos > bgruening > diamond

diff diamond_view.xml @ 7:62c9df8382c2 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diamond commit b2d290a8b609ebbc7f4b93716370143c41062ad4"
author bgruening
date Tue, 03 Dec 2019 17:40:05 -0500
parents 64be1ac21109
children 54f751e413f4
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line diff
--- a/diamond_view.xml	Thu Sep 27 06:30:30 2018 -0400
+++ b/diamond_view.xml	Tue Dec 03 17:40:05 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="bg_diamond_view" name="Diamond" version="@VERSION@">
+<tool id="bg_diamond_view" name="Diamond" version="@VERSION@" profile="19.01">
     <description>generate formatted output from DAA files</description>
     <macros>
         <import>macros.xml</import>
@@ -7,7 +7,7 @@
     <expand macro="stdio" />
     <expand macro="version_command" />
     <command><![CDATA[
-    ## need to link because diamont tries to open dataset_xxx.dat.daa 	
+    ## need to link because diamont tries to open dataset_xxx.dat.daa
     ln -s '$daa' input.daa &&
     diamond
         view
@@ -57,7 +57,7 @@
                 <param name="max_target_seqs" value="1" />
             </conditional>
             <param name="forwardonly" value="--forwardonly" />
-            <output name="blast_tabular" file="diamond_results.sam"/>
+            <output name="blast_tabular" file="diamond_results.sam" lines_diff="2"/>
         </test>
     </tests>