# HG changeset patch
# User iuc
# Date 1754314045 0
# Node ID 8b8a3f793f0fc899b91c43f34f494e2fbafe7cd2
# Parent  20d92dc4c6cb686a5f2c222df12fe4eb1719ffa8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond commit 6e4899ebb6b1cc2af6011d20d40beaf8d4cbbb34

diff -r 20d92dc4c6cb -r 8b8a3f793f0f diamond_view.xml
--- a/diamond_view.xml	Tue Jun 10 13:52:02 2025 +0000
+++ b/diamond_view.xml	Mon Aug 04 13:27:25 2025 +0000
@@ -42,7 +42,11 @@
                 <param name="hit_filter_select" value="max"/>
                 <param name="max_target_seqs" value="1"/>
             </conditional>
-            <output name="blast_tabular" file="diamond_results.xml"/>
+            <output name="blast_tabular">
+                <assert_contents>
+                    <has_text text="&lt;BlastOutput_version&gt;diamond @TOOL_VERSION@&lt;/BlastOutput_version&gt;"/>
+                </assert_contents>
+            </output>
         </test>
         <test expect_num_outputs="1">
             <param name="daa" ftype="daa" value="diamond_results.daa"/>
diff -r 20d92dc4c6cb -r 8b8a3f793f0f macros.xml
--- a/macros.xml	Tue Jun 10 13:52:02 2025 +0000
+++ b/macros.xml	Mon Aug 04 13:27:25 2025 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.1.12</token>
+    <token name="@TOOL_VERSION@">2.1.13</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="requirements">
         <requirements>
diff -r 20d92dc4c6cb -r 8b8a3f793f0f test-data/diamond_results.xml
--- a/test-data/diamond_results.xml	Tue Jun 10 13:52:02 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,69 +0,0 @@
-<?xml version="1.0"?>
-<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
-<BlastOutput>
-  <BlastOutput_program>blastp</BlastOutput_program>
-  <BlastOutput_version>diamond 2.1.12</BlastOutput_version>
-  <BlastOutput_reference>Benjamin Buchfink, Xie Chao, and Daniel Huson (2015), &quot;Fast and sensitive protein alignment using DIAMOND&quot;, Nature Methods 12:59-60.</BlastOutput_reference>
-  <BlastOutput_db></BlastOutput_db>
-  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
-  <BlastOutput_query-def>sequence</BlastOutput_query-def>
-  <BlastOutput_query-len>283</BlastOutput_query-len>
-  <BlastOutput_param>
-    <Parameters>
-      <Parameters_matrix>blosum62</Parameters_matrix>
-      <Parameters_expect>0.001</Parameters_expect>
-      <Parameters_gap-open>11</Parameters_gap-open>
-      <Parameters_gap-extend>1</Parameters_gap-extend>
-      <Parameters_filter>F</Parameters_filter>
-    </Parameters>
-  </BlastOutput_param>
-<BlastOutput_iterations>
-<Iteration>
-  <Iteration_iter-num>1</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>sequence</Iteration_query-def>
-  <Iteration_query-len>283</Iteration_query-len>
-<Iteration_hits>
-<Hit>
-  <Hit_num>1</Hit_num>
-  <Hit_id>gi|5524211|gb|AAD44166.1|</Hit_id>
-  <Hit_def></Hit_def>
-  <Hit_accession>AAD44166</Hit_accession>
-  <Hit_len>284</Hit_len>
-  <Hit_hsps>
-    <Hsp>
-      <Hsp_num>1</Hsp_num>
-      <Hsp_bit-score>550</Hsp_bit-score>
-      <Hsp_score>1417</Hsp_score>
-      <Hsp_evalue>1.44e-205</Hsp_evalue>
-      <Hsp_query-from>1</Hsp_query-from>
-      <Hsp_query-to>283</Hsp_query-to>
-      <Hsp_hit-from>1</Hsp_hit-from>
-      <Hsp_hit-to>284</Hsp_hit-to>
-      <Hsp_query-frame>0</Hsp_query-frame>
-      <Hsp_hit-frame>0</Hsp_hit-frame>
-      <Hsp_identity>283</Hsp_identity>
-      <Hsp_positive>283</Hsp_positive>
-      <Hsp_gaps>1</Hsp_gaps>
-      <Hsp_align-len>284</Hsp_align-len>
-         <Hsp_qseq>LCLYTHIGRNIYYGSYLYSETWNTGIMLLLITMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGTNLVEWIWGGFSVDKATLNRFFAFHFIL-FTMVALAGVHLTFLHETGSNNPLGLTSDSDKIPFHPYYTIKDFLGLLILXXXXXXXALLSPDMLGDPDNHMPADPLNTPLHIKPEWYFLFAYAILRSVPNKLGGVLALFLSIVILGLMPFLHTSKHRSMMLRPLSQALFWTLTMDLLTLTWIGSQPVEYPYTIIGQMASILYFSIILAFLPIAGXIENY</Hsp_qseq>
-         <Hsp_hseq>LCLYTHIGRNIYYGSYLYSETWNTGIMLLLITMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGTNLVEWIWGGFSVDKATLNRFFAFHFILPFTMVALAGVHLTFLHETGSNNPLGLTSDSDKIPFHPYYTIKDFLGLLILXXXXXXXALLSPDMLGDPDNHMPADPLNTPLHIKPEWYFLFAYAILRSVPNKLGGVLALFLSIVILGLMPFLHTSKHRSMMLRPLSQALFWTLTMDLLTLTWIGSQPVEYPYTIIGQMASILYFSIILAFLPIAGXIENY</Hsp_hseq>
-      <Hsp_midline>LCLYTHIGRNIYYGSYLYSETWNTGIMLLLITMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGTNLVEWIWGGFSVDKATLNRFFAFHFIL FTMVALAGVHLTFLHETGSNNPLGLTSDSDKIPFHPYYTIKDFLGLLILXXXXXXXALLSPDMLGDPDNHMPADPLNTPLHIKPEWYFLFAYAILRSVPNKLGGVLALFLSIVILGLMPFLHTSKHRSMMLRPLSQALFWTLTMDLLTLTWIGSQPVEYPYTIIGQMASILYFSIILAFLPIAGXIENY</Hsp_midline>
-    </Hsp>
-  </Hit_hsps>
-</Hit>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>2</Statistics_db-num>
-      <Statistics_db-len>568</Statistics_db-len>
-      <Statistics_hsp-len>0</Statistics_hsp-len>
-      <Statistics_eff-space>0</Statistics_eff-space>
-      <Statistics_kappa>0.041000</Statistics_kappa>
-      <Statistics_lambda>0.267000</Statistics_lambda>
-      <Statistics_entropy>0</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-</Iteration>
-</BlastOutput_iterations>
-</BlastOutput>
\ No newline at end of file