Mercurial > repos > bgruening > diffbind
annotate tool_dependencies.xml @ 3:d6dcb3dd5f8f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 78d26b3a3bbaf30d4d1367a0361618876fe69ae7
| author | bgruening |
|---|---|
| date | Tue, 08 Mar 2016 08:13:00 -0500 |
| parents | 492d5ac7b2e2 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 1 | 3 <package name="R" version="3.0.3"> |
|
2
492d5ac7b2e2
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
1
diff
changeset
|
4 <repository changeset_revision="afc48696ee5c" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 1 | 6 <package name="deseq2" version="1.2.10"> |
| 7 <repository changeset_revision="2d4a7ae561d6" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 0 | 8 </package> |
| 9 <package name="diffbind" version="1.8.3"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="setup_r_environment"> | |
|
2
492d5ac7b2e2
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
1
diff
changeset
|
13 <repository changeset_revision="afc48696ee5c" name="package_r_3_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 1 | 14 <package name="R" version="3.0.3" /> |
| 0 | 15 </repository> |
| 16 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package> | |
| 17 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package> | |
| 18 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package> | |
| 19 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package> | |
| 20 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gtools_3.1.1.tar.gz</package> | |
| 21 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gdata_2.13.2.tar.gz</package> | |
| 22 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/bitops_1.0-6.tar.gz</package> | |
| 23 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/caTools_1.16.tar.gz</package> | |
| 24 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package> | |
| 25 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/GenomicRanges_1.14.4.tar.gz</package> | |
| 26 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/RColorBrewer_1.0-5.tar.gz</package> | |
| 27 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package> | |
| 28 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package> | |
| 29 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gplots_2.12.1.tar.gz</package> | |
| 30 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package> | |
| 31 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package> | |
| 32 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/DiffBind_1.8.3.tar.gz</package> | |
| 33 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/getopt_1.20.0.tar.gz</package> | |
| 34 </action> | |
| 35 </actions> | |
| 36 </install> | |
| 37 <readme> | |
| 38 Differential Binding Analysis of ChIP-Seq peak data | |
| 39 http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html | |
| 40 </readme> | |
| 41 </package> | |
| 42 </tool_dependency> |