Mercurial > repos > bgruening > dotknot

comparison test-data/tmRNA_alignment.fasta @ 0:42d20ff5da1b draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 1973f3035c10db80883d80847ea254289f5cce2a-dirty
author bgruening
date Thu, 17 Sep 2015 17:10:07 -0400
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-1:000000000000 0:42d20ff5da1b
1 >Ecoli-tmRNA
2 GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAUCAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
3 >Mesoplasma florum tmRNA
4 GGGGAUGUCCUGGUUUCGACAGGAUACUCUGGUCAUAUAAUAGCAGUGGUGUGGUAGACCAUAAUACUUCUAGGUUUGAUAAAAUGCAAACAAAAACGAAGAAAACACAAACGAAGUUCCAACAUUUAUGUUAAAUGCUGGACAAGCAAAUUACGCUUUCGCUUAAUUUGACUUAAAUACAAAUAUACGUUUGGCAAUUUUUAAUAGUCUUGGAAUCUGUUAAUUAUUGUACAUACCAAUUCCAAUAGAAAUUAUGAUCGUAAUAAAUAAUUUUGAAACUCAAUUACGGAUGUUAUAUUAGUCUUUUGAUAAUUUUAUUUAAUAUAGCAAAUUAGAAAAUUAUCUAAACUGUAGAAUUUAUAUGAUUCGGUAUUUUGGACGUGGGUUCGAUUCCCACCAUCUCCACCA
5 >Thermus thermophilus tmRNA, version 1 {HB8}:
6 GGGGGUGAAACGGUCUCGACGGGGGUCGCCGAGGGCGUGGCUGCGCGCCGAGGUGCGGGUGGCCUCGUAAAAACCCGCAACGGCAUAACUGCCAACACCAACUACGCUCUCGCGGCUUAAUGACCGCGACCUCGCCCGGUAGCCCUGCCGGGGGCUCACCGGAAGCGGGGACACAAACCCGGCUAGCCCGGGGCCACGCCCUCUAACCCCGGGCGAAGCUUGAAGGGGGCUCGCUCCUGGCCGCCCGUCCGCGGGCCAAGCCAGGAGGACACGCGAAACGCGGACUACGCGCGUAGAGGCCCGCCGUAGAGACCUUCGGACGGGGGUUCGACUCCCCCCACCUCCACCA
7 >Actinobacillus actinomycetemcomitans tmRNA
8 GGGGCUGAUUCUGGAUUCGACGGGAUUGGCGAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCAAAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCUCCCCAGCUUCCGCUCGUAAGACGGGGAUCAAGCGGAGUCAAACCUAAACGAGAUCGUGUGGACGCUUCGGCUUGGAGAUCGAAACACUAAAUUGAAUCAAGCUAGUUUAUUCUUCGCGUGUCUGUCCGCAGGGGAUAAAUGAAGUUAAAGACCAGACUAAACGUGUAGUGCUGAAGGUAGAGUAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
9 >marine_actinobacteri.1 AAOB01000009.1/82671-83044
10 GGGGAUGAUCGGUUUCGACAUUGCCUGCAAAACUGUGAGAAGCGGGUCGAGAAUGCAGCCUUAUCUCGUUAACGAUGACUGCAAACUAUAAGUGCCAAUUCAAAGCGCACUGACUUCGCCCUCGCUGCCUAAGCGAGCGCACUAAAGAAGUCCGUCAGACCGGGAAUGCUCUCUACCCGGAUCCUGGCGCAAUUUAGAGAGAUUGCUGCGUAGUUACGCCUGAGGGCUACGCGGGACUUGCACUCUGGCUGGGCUUGUUGAUCUAGGUGCUUGUGGCAAAGAUCAGAGCCGAGUAGAACGUCUGCACAAGCUACACCCGUAGAAGGCACAGAAUUACAGCAGUGGACGGGGGUUCAAUUCCCCCCAUCUCCACC
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