Mercurial > repos > bgruening > dotknot

view test-data/test1_output.txt @ 0:42d20ff5da1b draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 1973f3035c10db80883d80847ea254289f5cce2a-dirty
author bgruening
date Thu, 17 Sep 2015 17:10:07 -0400
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>TMV
UGCAACUUGAGGUAGUCAAGAUGCAUAAUAAAUAACGGAUUGUGUCCGUAAUCACACGUGGUGCGUACGAUAACGCAUAGUGUUUUUCCCUCCACUUAAAUCGAAGGGUUGUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGAGGGGUUCGAAUCCCCCCGUUACCCCCGGUAGGGGCCCA
Sequence length:  214
Using TMV as file identifier

DotKnot is running...
Predicting pseudoknots...

Detected pseudoknots:
35 56 -10.97
ACGGAUUGUGUCCGUAAUCACA
(((((.[[[[)))))...]]]]

57 78 -12.92
CGUGGUGCGUACGAUAACGCAU
(((.[[[[[[)))...]]]]]]

79 108 -8.16
AGUGUUUUUCCCUCCACUUAAAUCGAAGGG
((((.....[[[[.))))........]]]]

111 176 -26.94
GUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGA
((((((....[[[[((((((.....(((((((...)))))))))))))))))))........]]]]

192 210 -13.83
CCGUUACCCCCGGUAGGGG
(((...[[[[)))..]]]]