Mercurial > repos > bgruening > flexynesis_cbioportal_import
diff flexynesis_utils.py @ 6:3f7481deaff1 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flexynesis commit 1afbaf45449e25238935e222f983da62392c067a
| author | bgruening |
|---|---|
| date | Fri, 04 Jul 2025 14:58:23 +0000 |
| parents | ee7e61ab554d |
| children | 693011647a67 |
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--- a/flexynesis_utils.py Mon Jun 30 19:36:28 2025 +0000 +++ b/flexynesis_utils.py Fri Jul 04 14:58:23 2025 +0000 @@ -156,8 +156,8 @@ # Save train and test data for key in data.keys(): try: - train_data[key].to_csv(os.path.join(output_dir, 'train', f'{key}.csv')) - test_data[key].to_csv(os.path.join(output_dir, 'test', f'{key}.csv')) + train_data[key].to_csv(os.path.join(output_dir, 'train', f'{key}.tabular'), sep='\t') + test_data[key].to_csv(os.path.join(output_dir, 'test', f'{key}.tabular'), sep='\t') except Exception as e: print(f"Error saving {key}: {e}") continue @@ -244,8 +244,8 @@ binarized_matrix = binarize_mutations(mutations_df, gene_idx=args.gene_idx, sample_idx=args.sample_idx) # Save binarized matrix - output_file = os.path.join(args.out, 'binarized_mutations.csv') - binarized_matrix.to_csv(output_file) + output_file = os.path.join(args.out, 'binarized_mutations.tabular') + binarized_matrix.to_csv(output_file, sep='\t') print(f"Binarized mutation matrix saved to {output_file}") except Exception as e: