Mercurial > repos > bgruening > flexynesis_utils

comparison flexynesis_utils.xml @ 6:c348c91a487d draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flexynesis commit bcee55468e70cd025cc5359bef5e9991e893eca9
author bgruening
date Thu, 16 Oct 2025 20:16:33 +0000
parents f73ce81f7795
children
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5:f73ce81f7795 6:c348c91a487d
49 import sys 49 import sys
50 sys.path.append('$__tool_directory__/') 50 sys.path.append('$__tool_directory__/')
51 51
52 import numpy as np 52 import numpy as np
53 import pandas as pd 53 import pandas as pd
54 from flexynesis import ( 54 from flexynesis.utils import (
55 louvain_clustering, 55 louvain_clustering,
56 get_optimal_clusters, 56 get_optimal_clusters,
57 compute_ami_ari, 57 compute_ami_ari,
58 k_means_clustering 58 k_means_clustering
59 ) 59 )
204 <param name="k" value="15"/> 204 <param name="k" value="15"/>
205 </conditional> 205 </conditional>
206 <output name="util_out"> 206 <output name="util_out">
207 <assert_contents> 207 <assert_contents>
208 <has_text_matching expression="sample_id\tvariable\tclass_label\tprobability\tknown_label\tpredicted_label\tsplit\tlouvain_cluster"/> 208 <has_text_matching expression="sample_id\tvariable\tclass_label\tprobability\tknown_label\tpredicted_label\tsplit\tlouvain_cluster"/>
209 <has_text_matching expression="MB-4818\tCLAUDIN_SUBTYPE\tLumA\t0.8582904\tLumB\tLumA\ttest\t3.0"/> 209 <has_text_matching expression="MB-4818\tCLAUDIN_SUBTYPE\tLumA\t0.8582904\tLumB\tLumA\ttest\t[0-9]+"/>
210 </assert_contents> 210 </assert_contents>
211 </output> 211 </output>
212 </test> 212 </test>
213 <!-- test 2: Get optimal clusters --> 213 <!-- test 2: Get optimal clusters -->
214 <test expect_num_outputs="1"> 214 <test expect_num_outputs="1">