Mercurial > repos > bgruening > gfastats

comparison gfastats.xml @ 6:690c2caa367e draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 10ccc47885ce71e602d66e157bd475f1facbd042
author bgruening
date Mon, 05 Dec 2022 12:20:31 +0000
parents 3fba9c77550a
children 3ef480892a9f
comparison
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5:5127a713de83 6:690c2caa367e
31 --sort $mode_condition.sort 31 --sort $mode_condition.sort
32 #end if 32 #end if
33 #if $mode_condition.homopolymer_compress 33 #if $mode_condition.homopolymer_compress
34 --homopolymer-compress $mode_condition.homopolymer_compress 34 --homopolymer-compress $mode_condition.homopolymer_compress
35 #end if 35 #end if
36 $mode_condition.discover_paths
36 -o dataset.$mode_condition.output_condition.out_format 37 -o dataset.$mode_condition.output_condition.out_format
37 #if $mode_condition.output_condition.out_format == 'fasta' 38 #if $mode_condition.output_condition.out_format == 'fasta'
38 #if $mode_condition.output_condition.line_length 39 #if $mode_condition.output_condition.line_length
39 --line-length $mode_condition.output_condition.line_length 40 --line-length $mode_condition.output_condition.line_length
40 #end if 41 #end if
127 </when> 128 </when>
128 <when value="fastq"/> 129 <when value="fastq"/>
129 <when value="fastq.gz"/> 130 <when value="fastq.gz"/>
130 <when value="gfa"/> 131 <when value="gfa"/>
131 <when value="gfa.gz"/> 132 <when value="gfa.gz"/>
132 </conditional> 133 </conditional>
134 <param argument="--discover-paths" type="boolean" truevalue="--discover-paths" falsevalue="" checked="false" label="Generates the initial set of paths" help="In the graph space an assembly
135 is a collection of segment and edges/gaps between these segments. A path defines a potential walk through the segments and edges/gaps that corresponds to a hypothesis of the actual linear sequence" />
133 <param argument="--sort" type="select" label="Sort sequences" help="Specify how to sort the sequences. Ascending/descending used the sequence/path header."> 136 <param argument="--sort" type="select" label="Sort sequences" help="Specify how to sort the sequences. Ascending/descending used the sequence/path header.">
134 <option value="" selected="true">Disabled</option> 137 <option value="" selected="true">Disabled</option>
135 <option value="ascending">Ascending</option> 138 <option value="ascending">Ascending</option>
136 <option value="descending">Descending</option> 139 <option value="descending">Descending</option>
137 <option value="largest">Largest</option> 140 <option value="largest">Largest</option>