Mercurial > repos > bgruening > gfastats

comparison test-data/test_11_stats.tabular @ 3:8ccbf07a5433 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit f71fdaf79bda6704ae6dd1360406393c90026de5
author bgruening
date Mon, 11 Jul 2022 14:13:13 +0000
parents ad1149b4f795
children
comparison
equal deleted inserted replaced
2:ad1149b4f795 3:8ccbf07a5433
3 Average scaffold length 1680.00 3 Average scaffold length 1680.00
4 Scaffold N50 1680 4 Scaffold N50 1680
5 Scaffold auN 1680.00 5 Scaffold auN 1680.00
6 Scaffold L50 1 6 Scaffold L50 1
7 Largest scaffold 1680 7 Largest scaffold 1680
8 Smallest scaffold 1680
9 # contigs 2
8 Total contig length 1679 10 Total contig length 1679
9 Average contig length 839.50 11 Average contig length 839.50
10 Contig N50 922 12 Contig N50 922
11 Contig auN 847.61 13 Contig auN 847.61
12 Contig L50 1 14 Contig L50 1
13 Largest contig 922 15 Largest contig 922
16 Smallest contig 757
14 # gaps in scaffolds 1 17 # gaps in scaffolds 1
15 Total gap length in scaffolds 1 18 Total gap length in scaffolds 1
16 Average gap length in scaffolds 1.00 19 Average gap length in scaffolds 1.00
17 Gap N50 in scaffolds 1 20 Gap N50 in scaffolds 1
18 Gap auN in scaffolds 1.00 21 Gap auN in scaffolds 1.00
19 Gap L50 in scaffolds 1 22 Gap L50 in scaffolds 1
20 Largest gap in scaffolds 1 23 Largest gap in scaffolds 1
24 Smallest gap in scaffolds 1
21 Base composition (A:C:G:T) 388:497:402:392 25 Base composition (A:C:G:T) 388:497:402:392
22 GC content % 53.54 26 GC content % 53.54
23 # soft-masked bases 0 27 # soft-masked bases 0
24 # segments 2 28 # segments 2
25 Total segment length 1679 29 Total segment length 1679