Mercurial > repos > bgruening > gfstats

comparison test-data/test_04_stats.tabular @ 0:5f250ffcb1af draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 6ca9363cc4e0da886aab9accd79d52663247af29"
author bgruening
date Tue, 08 Mar 2022 21:49:13 +0000
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comparison
equal deleted inserted replaced
-1:000000000000 0:5f250ffcb1af
1 Expected genome size 600000
2 # scaffolds 3
3 Total scaffold length 419576
4 Average scaffold length 139858.67
5 Scaffold N50 417540
6 Scaffold auN 415520.91
7 Scaffold L50 1
8 Scaffold NG50 417540
9 Scaffold auNG 290571.00
10 Scaffold LG50 1
11 Largest scaffold 417540
12 # contigs 6
13 Total contig length 419573
14 Average contig length 69928.83
15 Contig N50 416949
16 Contig auN 414345.81
17 Contig L50 1
18 Contig NG50 416949
19 Contig auNG 289747.19
20 Contig LG50 1
21 Largest contig 416949
22 # gaps 3
23 Total gap length 3
24 Average gap length 1.00
25 Gap N50 1
26 Gap auN 1.00
27 Gap L50 2
28 Largest gap 1
29 Base composition (ACGT) 102144, 112550, 104859, 100020
30 GC content % 51.82
31 # soft-masked bases 0
32 # paths 3
33 Scaffold N10 417540
34 Scaffold N20 417540
35 Scaffold N30 417540
36 Scaffold N40 417540
37 Scaffold N50 417540
38 Scaffold N60 417540
39 Scaffold N70 417540
40 Scaffold N80 417540
41 Scaffold N90 417540
42 Scaffold N100 356
43 Scaffold L10 1
44 Scaffold L20 1
45 Scaffold L30 1
46 Scaffold L40 1
47 Scaffold L50 1
48 Scaffold L60 1
49 Scaffold L70 1
50 Scaffold L80 1
51 Scaffold L90 1
52 Scaffold L100 3
53 Scaffold NG10 417540
54 Scaffold NG20 417540
55 Scaffold NG30 417540
56 Scaffold NG40 417540
57 Scaffold NG50 417540
58 Scaffold NG60 417540
59 Scaffold NG70 0
60 Scaffold NG80 0
61 Scaffold NG90 0
62 Scaffold NG100 0
63 Scaffold LG10 1
64 Scaffold LG20 1
65 Scaffold LG30 1
66 Scaffold LG40 1
67 Scaffold LG50 1
68 Scaffold LG60 1
69 Scaffold LG70 0
70 Scaffold LG80 0
71 Scaffold LG90 0
72 Scaffold LG100 0
73 Contig N10 416949
74 Contig N20 416949
75 Contig N30 416949
76 Contig N40 416949
77 Contig N50 416949
78 Contig N60 416949
79 Contig N70 416949
80 Contig N80 416949
81 Contig N90 416949
82 Contig N100 101
83 Contig L10 1
84 Contig L20 1
85 Contig L30 1
86 Contig L40 1
87 Contig L50 1
88 Contig L60 1
89 Contig L70 1
90 Contig L80 1
91 Contig L90 1
92 Contig L100 6
93 Contig NG10 416949
94 Contig NG20 416949
95 Contig NG30 416949
96 Contig NG40 416949
97 Contig NG50 416949
98 Contig NG60 416949
99 Contig NG70 0
100 Contig NG80 0
101 Contig NG90 0
102 Contig NG100 0
103 Contig LG10 1
104 Contig LG20 1
105 Contig LG30 1
106 Contig LG40 1
107 Contig LG50 1
108 Contig LG60 1
109 Contig LG70 0
110 Contig LG80 0
111 Contig LG90 0
112 Contig LG100 0
113 Gap N10 1
114 Gap N20 1
115 Gap N30 1
116 Gap N40 1
117 Gap N50 1
118 Gap N60 1
119 Gap N70 1
120 Gap N80 1
121 Gap N90 1
122 Gap N100 1
123 Gap L10 1
124 Gap L20 1
125 Gap L30 1
126 Gap L40 2
127 Gap L50 2
128 Gap L60 2
129 Gap L70 3
130 Gap L80 3
131 Gap L90 3
132 Gap L100 3