--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sat Jul 06 10:09:30 2013 -0400
@@ -0,0 +1,30 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="biopython" version="1.61">
+        <repository name="package_biopython_1_61" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="GLIMMER_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
+    </set_environment>
+    <package name="glimmer" version="3.02b">
+        <install version="1.0">
+            <actions>
+                <action type="download_file">http://www.cbcb.umd.edu/software/glimmer/glimmer302b.tar.gz</action>
+                <action type="shell_command">tar xfvz glimmer302b.tar.gz</action>
+                <action type="shell_command">cd ./glimmer3.02/src &amp;&amp; make</action>
+
+                <action type="move_directory_files">
+                    <source_directory>./glimmer3.02/bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>To compile glimmer you need a C compiler (usually gcc).
+Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses.
+Glimmer (Gene Locator and Interpolated Markov ModelER) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA.
+http://www.cbcb.umd.edu/software/glimmer/</readme>
+    </package>
+</tool_dependency>