Mercurial > repos > bgruening > glimmer_gbk_to_orf
diff test-data/test.gbk @ 0:6351903666da draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit 37388949e348d221170659bbee547bf4ac67ef1a
| author | bgruening |
|---|---|
| date | Tue, 28 Nov 2017 10:07:28 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.gbk Tue Nov 28 10:07:28 2017 -0500 @@ -0,0 +1,257 @@ +LOCUS contig1 350 bp DNA linear 21-MAR-2017 +DEFINITION Genus species strain strain. +ACCESSION +VERSION +KEYWORDS . +SOURCE Genus species + ORGANISM Genus species + Unclassified. +COMMENT Annotated using prokka 1.12 from + https://github.com/tseemann/prokka. +FEATURES Location/Qualifiers + source 1..350 + /organism="Genus species" + /mol_type="genomic DNA" + /strain="strain" +ORIGIN + 1 gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa + 61 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac + 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt + 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag + 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt + 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc +// +LOCUS contig2 840 bp DNA linear 21-MAR-2017 +DEFINITION Genus species strain strain. +ACCESSION +VERSION +KEYWORDS . +SOURCE Genus species + ORGANISM Genus species + Unclassified. +COMMENT Annotated using prokka 1.12 from + https://github.com/tseemann/prokka. +FEATURES Location/Qualifiers + source 1..840 + /organism="Genus species" + /mol_type="genomic DNA" + /strain="strain" + CDS 40..498 + /locus_tag="PROKKA_00001" + /inference="ab initio prediction:Prodigal:2.6" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI + ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE + FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM" + CDS 498..614 + /locus_tag="PROKKA_00002" + /inference="ab initio prediction:Prodigal:2.6" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" +ORIGIN + 1 tgagtccgat gctgttcaac cactaatagg taagaaatca tgagtcaagt tactgaacaa + 61 tccgtacgtt tccagaccgc tttggcctct attaagctca ttcaggcttc tgccgttttg + 121 gatttaaccg aagatgattt cgattttctg acgagtaaca aagtttggat tgctactgac + 181 cgctctcgtg ctcgtcgctg cgttgaggct tgcgtttatg gtacgctgga ctttgtggga + 241 taccctcgct ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat + 301 cccgtcaaca ttcaaacggc ctgtctcatc atggaaggcg ctgaatttac ggaaaacatt + 361 attaatggcg tcgagcgtcc ggttaaagcc gctgaattgt tcgcgtttac cttgcgtgta + 421 cgcgcaggaa acactgacgt tcttactgac gcagaagaaa acgtgcgtca aaaattacgt + 481 gcggaaggag tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cctggtcgtc + 541 cgcagccgtt gcgaggtact aaaggcaagc gtaaaggcgc tcgtctttgg tatgtaggtg + 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata + 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc + 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga + 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta +// +LOCUS contig3 210 bp DNA linear 21-MAR-2017 +DEFINITION Genus species strain strain. +ACCESSION +VERSION +KEYWORDS . +SOURCE Genus species + ORGANISM Genus species + Unclassified. +COMMENT Annotated using prokka 1.12 from + https://github.com/tseemann/prokka. +FEATURES Location/Qualifiers + source 1..210 + /organism="Genus species" + /mol_type="genomic DNA" + /strain="strain" +ORIGIN + 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta + 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata + 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt + 181 tgtttcaggg ttatttgaat atctataaca +// +LOCUS contig4 1260 bp DNA linear 21-MAR-2017 +DEFINITION Genus species strain strain. +ACCESSION +VERSION +KEYWORDS . +SOURCE Genus species + ORGANISM Genus species + Unclassified. +COMMENT Annotated using prokka 1.12 from + https://github.com/tseemann/prokka. +FEATURES Location/Qualifiers + source 1..1260 + /organism="Genus species" + /mol_type="genomic DNA" + /strain="strain" + CDS 21..884 + /locus_tag="PROKKA_00003" + /inference="ab initio prediction:Prodigal:2.6" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM + TTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSN + LWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI + QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSY + VSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN + LPTTRDSIMTS" +ORIGIN + 1 actattttaa agcgccgtgg atgcctgacc gtaccgaggc taaccctaat gagcttaatc + 61 aagatgatgc tcgttatggt ttccgttgct gccatctcaa aaacatttgg actgctccgc + 121 ttcctcctga gactgagctt tctcgccaaa tgacgacttc taccacatct attgacatta + 181 tgggtctgca agctgcttat gctaatttgc atactgacca agaacgtgat tacttcatgc + 241 agcgttacca tgatgttatt tcttcatttg gaggtaaaac ctcttatgac gctgacaacc + 301 gtcctttact tgtcatgcgc tctaatctct gggcatctgg ctatgatgtt gatggaactg + 361 accaaacgtc gttaggccag ttttctggtc gtgttcaaca gacctataaa cattctgtgc + 421 cgcgtttctt tgttcctgag catggcacta tgtttactct tgcgcttgtt cgttttccgc + 481 ctactgcgac taaagagatt cagtacctta acgctaaagg tgctttgact tataccgata + 541 ttgctggcga ccctgttttg tatggcaact tgccgccgcg tgaaatttct atgaaggatg + 601 ttttccgttc tggtgattcg tctaagaagt ttaagattgc tgagggtcag tggtatcgtt + 661 atgcgccttc gtatgtttct cctgcttatc accttcttga aggcttccca ttcattcagg + 721 aaccgccttc tggtgatttg caagaacgcg tacttattcg ccaccatgat tatgaccagt + 781 gtttccagtc cgttcagttg ttgcagtgga atagtcaggt taaatttaat gtgaccgttt + 841 atcgcaatct gccgaccact cgcgattcaa tcatgacttc gtgataaaag attgagtgtg + 901 aggttataac gccgaagcgg taaaaatttt aatttttgcc gctgaggggt tgaccaagcg + 961 aagcgcggta ggttttctgc ttaggagttt aatcatgttt cagactttta tttctcgcca + 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc + 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt + 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc + 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc +// +LOCUS contig5 490 bp DNA linear 21-MAR-2017 +DEFINITION Genus species strain strain. +ACCESSION +VERSION +KEYWORDS . +SOURCE Genus species + ORGANISM Genus species + Unclassified. +COMMENT Annotated using prokka 1.12 from + https://github.com/tseemann/prokka. +FEATURES Location/Qualifiers + source 1..490 + /organism="Genus species" + /mol_type="genomic DNA" + /strain="strain" + CDS 275..406 + /locus_tag="PROKKA_00004" + /inference="ab initio prediction:Prodigal:2.6" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL" +ORIGIN + 1 ctgtttggtt cgctttgagt cttcttcggt tccgactacc ctcccgactg cctatgatgt + 61 ttatcctttg aatggtcgcc atgatggtgg ttattatacc gtcaaggact gtgtgactat + 121 tgacgtcctt ccccgtacgc cgggcaataa cgtttatgtt ggtttcatgg tttggtctaa + 181 ctttaccgct actaaatgcc gcggattggt ttcgctgaat caggttatta aagagattat + 241 ttgtctccag ccacttaagt gaggtgattt atgtttggtg ctattgctgg cggtattgct + 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc + 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct + 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt + 481 tttgtttctg +// +LOCUS contig6 1960 bp DNA linear 21-MAR-2017 +DEFINITION Genus species strain strain. +ACCESSION +VERSION +KEYWORDS . +SOURCE Genus species + ORGANISM Genus species + Unclassified. +COMMENT Annotated using prokka 1.12 from + https://github.com/tseemann/prokka. +FEATURES Location/Qualifiers + source 1..1960 + /organism="Genus species" + /mol_type="genomic DNA" + /strain="strain" + CDS 6..767 + /locus_tag="PROKKA_00005" + /inference="ab initio prediction:Prodigal:2.6" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD + YLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIA + GIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQ + AQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASG + VVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK" +ORIGIN + 1 gtgctatggc taaagctggt aaaggacttc ttgaaggtac gttgcaggct ggcacttctg + 61 ccgtttctga taagttgctt gatttggttg gacttggtgg caagtctgcc gctgataaag + 121 gaaaggatac tcgtgattat cttgctgctg catttcctga gcttaatgct tgggagcgtg + 181 ctggtgctga tgcttcctct gctggtatgg ttgacgccgg atttgagaat caaaaagagc + 241 ttactaaaat gcaactggac aatcagaaag agattgccga gatgcaaaat gagactcaaa + 301 aagagattgc tggcattcag tcggcgactt cacgccagaa tacgaaagac caggtatatg + 361 cacaaaatga gatgcttgct tatcaacaga aggagtctac tgctcgcgtt gcgtctatta + 421 tggaaaacac caatctttcc aagcaacagc aggtttccga gattatgcgc caaatgctta + 481 ctcaagctca aacggctggt cagtatttta ccaatgacca aatcaaagaa atgactcgca + 541 aggttagtgc tgaggttgac ttagttcatc agcaaacgca gaatcagcgg tatggctctt + 601 ctcatattgg cgctactgca aaggatattt ctaatgtcgt cactgatgct gcttctggtg + 661 tggttgatat ttttcatggt attgataaag ctgttgccga tacttggaac aatttctgga + 721 aagacggtaa agctgatggt attggctcta atttgtctag gaaataaccg tcaggattga + 781 caccctccca attgtatgtt ttcatgcctc caaatcttgg aggctttttt atggttcgtt + 841 cttattaccc ttctgaatgt cacgctgatt attttgactt tgagcgtatc gaggctctta + 901 aacctgctat tgaggcttgt ggcatttcta ctctttctca atccccaatg cttggcttcc + 961 ataagcagat ggataaccgc atcaagctct tggaagagat tctgtctttt cgtatgcagg + 1021 gcgttgagtt cgataatggt gatatgtatg ttgacggcca taaggctgct tctgacgttc + 1081 gtgatgagtt tgtatctgtt actgagaagt taatggatga attggcacaa tgctacaatg + 1141 tgctccccca acttgatatt aataacacta tagaccaccg ccccgaaggg gacgaaaaat + 1201 ggtttttaga gaacgagaag acggttacgc agttttgccg caagctggct gctgaacgcc + 1261 ctcttaagga tattcgcgat gagtataatt accccaaaaa gaaaggtatt aaggatgagt + 1321 gttcaagatt gctggaggcc tccactatga aatcgcgtag aggctttgct attcagcgtt + 1381 tgatgaatgc aatgcgacag gctcatgctg atggttggtt tatcgttttt gacactctca + 1441 cgttggctga cgaccgatta gaggcgtttt atgataatcc caatgctttg cgtgactatt + 1501 ttcgtgatat tggtcgtatg gttcttgctg ccgagggtcg caaggctaat gattcacacg + 1561 ccgactgcta tcagtatttt tgtgtgcctg agtatggtac agctaatggc cgtcttcatt + 1621 tccatgcggt gcactttatg cggacacttc ctacaggtag cgttgaccct aattttggtc + 1681 gtcgggtacg caatcgccgc cagttaaata gcttgcaaaa tacgtggcct tatggttaca + 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc + 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg + 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta + 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact +// +LOCUS contig7 276 bp DNA linear 21-MAR-2017 +DEFINITION Genus species strain strain. +ACCESSION +VERSION +KEYWORDS . +SOURCE Genus species + ORGANISM Genus species + Unclassified. +COMMENT Annotated using prokka 1.12 from + https://github.com/tseemann/prokka. +FEATURES Location/Qualifiers + source 1..276 + /organism="Genus species" + /mol_type="genomic DNA" + /strain="strain" +ORIGIN + 1 tcccaagaag ctgttcagaa tcagaatgag ccgcaacttc gggatgaaaa tgctcacaat + 61 gacaaatctg tccacggagt gcttaatcca acttaccaag ctgggttacg acgcgacgcc + 121 gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc tgggaaaagt + 181 tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca aatttatgcg + 241 cgcttcgata aaaatgattg gcgtatccaa cctgca +//