Mercurial > repos > bgruening > glimmer_hmm
comparison glimmerHMM/glimmerhmm_to_sequence.xml @ 0:c9699375fcf6 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
| author | bgruening |
|---|---|
| date | Wed, 13 Jul 2016 10:55:48 -0400 |
| parents | |
| children | 4da91bb244dc |
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| -1:000000000000 | 0:c9699375fcf6 |
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| 1 <tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1"> | |
| 2 <description>converter</description> | |
| 3 <command interpreter='python'> | |
| 4 <![CDATA[ | |
| 5 glimmerhmm_to_sequence.py | |
| 6 $glimmerhmm_input | |
| 7 $genome_input | |
| 8 $output | |
| 9 $to_protein | |
| 10 ]]> | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param name="genome_input" type="data" format="fasta" label="Genome Sequence" /> | |
| 14 <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" /> | |
| 15 <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" /> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data name="output" format="fasta" /> | |
| 19 </outputs> | |
| 20 <help> | |
| 21 <![CDATA[ | |
| 22 | |
| 23 **What it does** | |
| 24 | |
| 25 It converts the GlimmerHMM GFF output to a Fasta File. | |
| 26 | |
| 27 ]]> | |
| 28 </help> | |
| 29 </tool> |