Mercurial > repos > bgruening > glimmer_hmm

diff glimmerHMM/glimmerhmm_to_sequence.xml @ 0:c9699375fcf6 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
author bgruening
date Wed, 13 Jul 2016 10:55:48 -0400
parents
children 4da91bb244dc
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/glimmerHMM/glimmerhmm_to_sequence.xml	Wed Jul 13 10:55:48 2016 -0400
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+<tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
+    <description>converter</description>
+    <command interpreter='python'>
+<![CDATA[
+    glimmerhmm_to_sequence.py
+        $glimmerhmm_input
+        $genome_input
+        $output
+        $to_protein
+]]>
+    </command>
+    <inputs>
+        <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
+        <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
+        <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
+    </inputs>
+    <outputs>
+        <data name="output" format="fasta" />
+    </outputs>
+    <help>
+<![CDATA[
+
+**What it does**
+
+It converts the GlimmerHMM GFF output to a Fasta File.
+
+]]>
+    </help>
+</tool>