Mercurial > repos > bgruening > graphmap_align
diff graphmap_align.xml @ 1:1c6c961851de draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/graphmap commit ba787e88cb93e78516b2fced5b60285d5f033ca3
| author | bgruening |
|---|---|
| date | Fri, 15 Mar 2024 13:12:50 +0000 |
| parents | 190175f4e143 |
| children |
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--- a/graphmap_align.xml Thu Sep 27 15:26:47 2018 -0400 +++ b/graphmap_align.xml Fri Mar 15 13:12:50 2024 +0000 @@ -3,6 +3,7 @@ <macros> <import>macros.xml</import> </macros> + <expand macro="xrefs" /> <expand macro="requirements" /> <command detect_errors="exit_code"> <![CDATA[ @@ -40,19 +41,19 @@ <test> <param name="r" value="Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta"/> <param name="d" value="E.coli_contigs.fasta"/> - <output name="output" ftype="bam" file="result1_map.bam"/> + <output name="output" ftype="bam" file="result1_map.bam" lines_diff="2"/> </test> <test> <param name="r" value="Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta"/> <param name="d" value="E.coli_contigs.fasta"/> <param name="preset" value="illumina"/> - <output name="output" ftype="bam" file="result2_map.bam"/> + <output name="output" ftype="bam" file="result2_map.bam" lines_diff="2"/> </test> <test> <param name="r" value="Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta"/> <param name="d" value="E.coli_contigs.fasta"/> <param name="preset" value="sensitive"/> - <output name="output" ftype="bam" file="result3_map.bam"/> + <output name="output" ftype="bam" file="result3_map.bam" lines_diff="2"/> </test></tests> <help><![CDATA[ GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapper @@ -60,4 +61,4 @@ GraphMap is licensed under The MIT License. ]]></help> <expand macro="citations" /> -</tool> \ No newline at end of file +</tool>