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view test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt @ 4:692b686622b6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit db84cc85222518217286b42262935edd3a49c98e"
author iuc
date Fri, 14 Aug 2020 06:21:34 -0400
parents 7095bb186016
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# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool	chr1_4487435_4487435	4.29  Mbp	4.69  Mbp	Sox17	Sum of interactions in fixate range: 810.0
# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool	chr1_4487435_4487435	4.29  Mbp	4.69  Mbp	Sox17	Sum of interactions in fixate range: 978.0
#Chromosome	Start	End	Gene	Relative distance	sum of interactions 1	target_1 raw	sum of interactions 2	target_2 raw	p-value
chr1	4512000	4529000	Sox17	41000	810.00000	24.80000	978.00000	33.20000		0.69177
chr1	4534000	4544000	Sox17	56000	810.00000	7.00000	978.00000	13.20000		0.37830
chr1	4585000	4590000	Sox17	102000	810.00000	8.00000	978.00000	2.40000		0.12513