Mercurial > repos > bgruening > hicexplorer_chicsignificantinteractions
view test-data/hicQuickQC/QC.log @ 10:f8320df1866b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 79133bc3739fbcc6c2055d589679aae312161d03
| author | iuc |
|---|---|
| date | Tue, 05 Nov 2024 00:06:29 +0000 |
| parents | 45a386d18509 |
| children |
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File /tmp/tmpjkr0wi60/tmp/tmp8o_td4fd.h5 Sequenced reads 983 Min rest. site distance 300 Max library insert size 1000 # count (percentage w.r.t. total sequenced reads) Pairs mappable, unique and high quality 300 (30.52) Hi-C contacts 215 (21.87) One mate unmapped 506 (51.48) One mate not unique 13 (1.32) Low mapping quality 164 (16.68) # count (percentage w.r.t. mappable, unique and high quality pairs) dangling end GATC (restriction sequence GATC) 1 (0.33) self ligation (removed) 0 (0.00) One mate not close to rest site 0 (0.00) same fragment 84 (28.00) self circle 33 (11.00) duplicated pairs 0 (0.00) # count (percentage w.r.t. total valid pairs used) inter chromosomal 24 (11.16) Intra short range (< 20kb) 61 (28.37) Intra long range (>= 20kb) 130 (60.47) Read pair type: inward pairs 42 (19.53) Read pair type: outward pairs 66 (30.70) Read pair type: left pairs 48 (22.33) Read pair type: right pairs 35 (16.28)