Mercurial > repos > bgruening > hicexplorer_chicviewpoint

diff chicViewpoint.xml @ 1:68c92dfd03d7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
author bgruening
date Wed, 05 Feb 2020 19:38:12 -0500
parents 6d76e532b669
children 0dabfd9a496b
line wrap: on
line diff
--- a/chicViewpoint.xml	Mon Dec 16 14:28:22 2019 -0500
+++ b/chicViewpoint.xml	Wed Feb 05 19:38:12 2020 -0500
@@ -77,6 +77,29 @@
             <output name="interactionFileNames" file="cHi-C/chicViewpoint/fileNames_two_matrices.txt" ftype="txt" lines_diff='0'/>
             
         </test>
+        <test>
+           <param name="matrix_h5_cooler_multiple" value="cHi-C/FL-E13-5_chr1.cool,cHi-C/MB-E10-5_chr1.cool"/>
+            
+            <param name="referencePoints" value="cHi-C/referencePoints_chicViewpoint.bed"/>
+            <param name="backgroundModelFile" value="cHi-C/background.bed"/>
+            <param name="fixateRange" value="500000"/>
+            <param name="rangeUpstream" value="200000"/>
+            <param name="rangeDownstream" value="200000"/>
+            <param name="writeFileNamesToFile" value="False"/>
+
+           
+            <output_collection name="interactionFilesCollection" type="list" count="6">
+                <element name="FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed" file="cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed" ftype="interval" lines_diff="3"/>
+                <element name="FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed" file="cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed" ftype="interval" lines_diff="3"/>
+                <element name="FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed" file="cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed" ftype="interval" lines_diff="3"/>
+
+                <element name="MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed" file="cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed" ftype="interval" lines_diff="3"/>
+                <element name="MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed" file="cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed" ftype="interval" lines_diff="3"/>
+                <element name="MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed" file="cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed" ftype="interval" lines_diff="3"/>
+            </output_collection>
+            <!-- <output name="interactionFileNames" file="cHi-C/chicViewpoint/fileNames_two_matrices.txt" ftype="txt" lines_diff='0'/> -->
+            
+        </test>
     </tests>
     <help><![CDATA[