comparison test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 3:7fe1a401d833 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
author iuc
date Tue, 24 Mar 2020 14:22:19 -0400
parents
children 628259b7ffb4
comparison
equal deleted inserted replaced
2:b9cdce1e57a1 3:7fe1a401d833
1 # Created with chicQualityControl version 3.4.3
2 # QC report for matrices: 0_matrix.cool 1_matrix.cool
3 #Sparsity threshold for rejection: sparsity <= 0.05 are rejected.
4
5 Number of reference points: 43
6 Number of accepted reference points: 35
7 Number of rejected reference points: 8
8 Number of faulty reference points: 0
9
10
11 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
12 It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
13 Please check the results of hicInfo to validate this for your data.