Mercurial > repos > bgruening > hicexplorer_chicviewpointbackgroundmodel
diff chicViewpointBackgroundModel.xml @ 8:9d02f1819e81 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
| author | iuc |
|---|---|
| date | Wed, 18 Oct 2023 11:03:34 +0000 |
| parents | 628259b7ffb4 |
| children |
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--- a/chicViewpointBackgroundModel.xml Tue Jan 10 18:54:10 2023 +0000 +++ b/chicViewpointBackgroundModel.xml Wed Oct 18 11:03:34 2023 +0000 @@ -23,10 +23,10 @@ ]]> </command> <inputs> <expand macro="matrix_h5_cooler_multiple_macro" /> - <param argument="--referencePoints" type="data" format='interval' label="Reference points" help="Bed file contains all reference points which should be used to build the background model." /> - <param argument="--averageContactBin" type="integer" value="5" label="Average contacts window size" help='Average the contacts of n bins via a sliding window approach.' /> - <param argument="--fixateRange" type="integer" value="500000" label="Clip background distance" help='Fixate score of background model starting at distance x. E.g. all values greater 500kb are set to the value of the 500kb bin.' /> - <param argument='--truncateZeros' type='boolean' truevalue='--truncateZeros' falsevalue="" checked="false" label="Truncate zeros" help="Set this parameter if you want truncate zeros to fight over dispersion." /> + <param argument="--referencePoints" type="data" format="interval" label="Reference points" help="Bed file contains all reference points which should be used to build the background model." /> + <param argument="--averageContactBin" type="integer" value="5" label="Average contacts window size" help="Average the contacts of n bins via a sliding window approach." /> + <param argument="--fixateRange" type="integer" value="500000" label="Clip background distance" help="Fixate score of background model starting at distance x. E.g. all values greater 500kb are set to the value of the 500kb bin." /> + <param argument="--truncateZeros" type="boolean" truevalue="--truncateZeros" falsevalue="" checked="false" label="Truncate zeros" help="Set this parameter if you want truncate zeros to fight over dispersion." /> </inputs> <outputs> <data name="background" from_work_dir="background.txt" format="tabular" label="${tool.name} on [${on_string}]: Background model" />