Mercurial > repos > bgruening > hicexplorer_hicaggregatecontacts
diff test-data/hicHyperoptDetectLoops/loops.bedgraph @ 14:b05f662f9f35 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2024 19:26:17 +0000 |
| parents | ee370ade24cd |
| children |
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--- a/test-data/hicHyperoptDetectLoops/loops.bedgraph Wed Oct 18 10:18:29 2023 +0000 +++ b/test-data/hicHyperoptDetectLoops/loops.bedgraph Mon Jul 01 19:26:17 2024 +0000 @@ -1,3 +1,3 @@ -# Created by HiCExplorer hicHyperoptDetectLoops 3.6 +# Created by HiCExplorer hicHyperoptDetectLoops 3.7.3 -{'matrixFile': 'matrix.cool', 'maxLoopDistance': 2600000, 'maximumNumberOfLoops': 5, 'oet': 4.594451600287669, 'p': 0.07561093779253786, 'peakWidth': 2, 'pit': 68.07931954714506, 'pp': 0.021875258449572325, 'proteinFile': 'hicValidateLocations/GSM935376_hg19_Gm12878_Smc3.narrowPeak', 'resolution': 2, 'threads': 1, 'windowSize': 10} \ No newline at end of file +{'chrPrefixLoops': None, 'matrixFile': 'matrix.cool', 'maxLoopDistance': 2300000, 'maximumNumberOfLoops': 5, 'oet': 1.230889168935347, 'p': 0.048940366161874596, 'peakWidth': 6, 'pit': 22.88867979095296, 'pp': 0.13365961880597724, 'proteinFile': '/tmp/tmpjkr0wi60/files/6/a/7/dataset_6a78c4eb-7f74-459b-9ed8-08972cc0c5f4.dat', 'resolution': 2, 'threads': 1, 'windowSize': 6} \ No newline at end of file