Mercurial > repos > bgruening > hicexplorer_hicaverageregions

comparison hicAverageRegions.xml @ 7:b15d27c440fd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
author iuc
date Tue, 10 Jan 2023 19:09:18 +0000
parents 03d7978293fe
children c72fa6cb8817
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6:03d7978293fe 7:b15d27c440fd
49 <data name="outFileName" from_work_dir="output_matrix.npz" format="zip" /> 49 <data name="outFileName" from_work_dir="output_matrix.npz" format="zip" />
50 </outputs> 50 </outputs>
51 <tests> 51 <tests>
52 <test> 52 <test>
53 <param name="matrix_h5_cooler" value="small_test_matrix.cool" /> 53 <param name="matrix_h5_cooler" value="small_test_matrix.cool" />
54 <param name="regions" value="hicAverageRegions/regions.bed" /> 54 <param name="regions" value="hicAverageRegions/regions.bed" ftype="bed"/>
55 <conditional name="rangeFormat_conditional"> 55 <conditional name="rangeFormat_conditional">
56 <param name="rangeFormat_selector" value='optionGenomicUnits' /> 56 <param name="rangeFormat_selector" value='optionGenomicUnits' />
57 <param name="upstreamRange" value='100000' /> 57 <param name="upstreamRange" value='100000' />
58 <param name="downstreamRange" value='100000' /> 58 <param name="downstreamRange" value='100000' />
59 </conditional> 59 </conditional>
60 <output name='outFileName' file='hicAverageRegions/result_range_100000.npz' ftype="zip" compare="sim_size" delta="20000" /> 60 <output name='outFileName' file='hicAverageRegions/result_range_100000.npz' ftype="zip" compare="sim_size" delta="20000" />
61 </test> 61 </test>
62 <test> 62 <test>
63 <param name="matrix_h5_cooler" value="small_test_matrix.cool" /> 63 <param name="matrix_h5_cooler" value="small_test_matrix.cool" />
64 <param name="regions" value="hicAverageRegions/regions.bed" /> 64 <param name="regions" value="hicAverageRegions/regions.bed" ftype="bed" />
65 <conditional name="rangeFormat_conditional"> 65 <conditional name="rangeFormat_conditional">
66 <param name="rangeFormat_selector" value='optionBinUnits' /> 66 <param name="rangeFormat_selector" value='optionBinUnits' />
67 <param name="upstreamRange" value='100' /> 67 <param name="upstreamRange" value='100' />
68 <param name="downstreamRange" value='100' /> 68 <param name="downstreamRange" value='100' />
69 </conditional> 69 </conditional>