Mercurial > repos > bgruening > hicexplorer_hicaverageregions

diff hicAverageRegions.xml @ 2:4b6a36c18e5e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4"
author iuc
date Wed, 11 Mar 2020 17:05:58 -0400
parents d4aa0255c1eb
children 03d7978293fe
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--- a/hicAverageRegions.xml	Wed Feb 05 19:43:33 2020 -0500
+++ b/hicAverageRegions.xml	Wed Mar 11 17:05:58 2020 -0400
@@ -6,7 +6,7 @@
     </macros>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-       
+
 
         ln -s '$matrix_h5_cooler' 'matrix_name.$matrix_h5_cooler.ext' &&
         @BINARY@ --matrix 'matrix_name.$matrix_h5_cooler.ext'
@@ -27,7 +27,7 @@
         <param argument="--regions" type="data" format='bed'
                         label="Regions to average"
                         help="BED file which stores a list of regions that are summed and averaged."/>
-       
+
          <conditional name="rangeFormat_conditional">
             <param name="rangeFormat_selector" type="select" label="List of chromosomes or a BED file containg regions">
                 <option value="optionGenomicUnits">Range in genomic units</option>
@@ -80,7 +80,7 @@
 Average regions
 ===============
 
-This tool sums Hi-C contacts around given reference points and computes their average. This tool is useful to detect differences at certain reference points as for example TAD boundaries between samples.
+This tool sums Hi-C contacts around given reference points and computes their average. This tool is useful to detect differences at certain reference points, TAD boundaries for instance, between samples.
 
 WARNING: This tool can only be used with fixed bin size Hi-C matrices. No guarantees how and if it works on restriction site interaction matrices.