Mercurial > repos > bgruening > hicexplorer_hicbuildmatrix

comparison test-data/hicInfo/hicInfo_output.txt @ 14:76b189fd277b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
author bgruening
date Wed, 05 Feb 2020 19:58:45 -0500
parents 4b85ea34afae
children ed2cca6b5de4
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13:4b85ea34afae 14:76b189fd277b
1 # Matrix information file. Created with HiCExplorer's hicInfo version 3.3 1 # Matrix information file. Created with HiCExplorer's hicInfo version 3.4
2 File: matrix_name.h5 2 File: matrix_name.h5
3 Size: 33,754 3 Size: 33,754
4 Bin_length: 5000 4 Bin_length: 5000
5 Sum of matrix: 35778.0 5 Sum of matrix: 35778.0
6 Chromosomes: chr2L, chr2LHet, chr2R, chr2RHet, chr3L, chr3LHet, chr3R, chr3RHet, chr4, chrM, chrUextra, chrU, chrX, chrXHet, chrYHet 6 Chromosomes:length: chr2L: 23011544 bp; chr2LHet: 368872 bp; chr2R: 21146708 bp; chr2RHet: 3288761 bp; chr3L: 24543557 bp; chr3LHet: 2555491 bp; chr3R: 27905053 bp; chr3RHet: 2517507 bp; chr4: 1351857 bp; chrM: 19517 bp; chrUextra: 29004656 bp; chrU: 10049037 bp; chrX: 22422827 bp; chrXHet: 204112 bp; chrYHet: 347038 bp;
7 Non-zero elements: 69,213 7 Non-zero elements: 69,213
8 Minimum (non zero): 1 8 Minimum (non zero): 1
9 Maximum: 8 9 Maximum: 8
10 NaN bins: 0 10 NaN bins: 0