Mercurial > repos > bgruening > hicexplorer_hicbuildmatrix

diff hicBuildMatrix.xml @ 6:30d427846764 draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
author iuc
date Tue, 02 Jan 2018 10:14:52 -0500
parents 3bc1425f9000
children be42758f532e
line wrap: on
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--- a/hicBuildMatrix.xml	Sat Dec 30 09:26:27 2017 -0500
+++ b/hicBuildMatrix.xml	Tue Jan 02 10:14:52 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicbuildmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.0">
+<tool id="hicexplorer_hicbuildmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.1">
     <description>creates a contact matrix</description>
     <macros>
         <token name="@BINARY@">hicBuildMatrix</token>
@@ -61,6 +61,7 @@
         mv ./QCfolder/* $qc.files_path/
         &&
         mv $qc.files_path/hicQC.html $qc
+        && mv $qc.files_path/*.log raw_qc
         && samtools sort ./unsorted.bam -o sorted.bam
        
 ]]>
@@ -128,6 +129,7 @@
             <filter>outputFormat == 'cool'</filter>
         </data>
         <data name="qc" format="html" label="${tool.name} QC"/>
+        <data name="raw_qc" from_work_dir='raw_qc' label="${tool.name} raw QC" />
     </outputs>
     <tests>
         <test>
@@ -145,6 +147,7 @@
 
             <output name="outBam" file="small_test_matrix_result_sorted.bam" ftype="bam"/>
             <output name="outFileName_h5" file="small_test_matrix_2.h5" ftype="h5" compare="sim_size"/>
+            <output name="raw_qc" file='raw_qc_report' compare='diff' lines_diff='2'/>
         </test>
     </tests>
     <help><![CDATA[