Mercurial > repos > bgruening > hicexplorer_hicbuildmatrix
diff macros.xml @ 2:eb0d14cdf8b8 draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 4d61b6bf2fed275ab38c226d0c4390b095a38251
author | bgruening |
---|---|
date | Thu, 02 Nov 2017 11:11:01 -0400 |
parents | 3d56e784d0bd |
children | 2a13bfe5bff2 |
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--- a/macros.xml Mon Apr 03 07:07:13 2017 -0400 +++ b/macros.xml Thu Nov 02 11:11:01 2017 -0400 @@ -1,24 +1,11 @@ <macros> - <xml name="stdio"> - <stdio> - <exit_code range="1:" /> - <exit_code range=":-1" /> - <regex match="Error:" /> - <regex match="Exception:" /> - <regex match="EXception:" /> - <regex match="Traceback" /> - </stdio> - </xml> - - <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">1.7.2</token> + <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> + <token name="@WRAPPER_VERSION@">1.8</token> <xml name="requirements"> <requirements> - <requirement type="package" version="2.7.13">python</requirement> <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement> <yield /> </requirements> - <expand macro="stdio" /> <version_command>@BINARY@ --version</version_command> </xml> @@ -325,7 +312,7 @@ .. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/ .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de -.. _help site: https://github.com/fidelram/deepTools/wiki/ +.. _help site: https://hicexplorer.readthedocs.org </token> @@ -537,6 +524,33 @@ </data> </xml> - + <xml name="track_input_h5_macro"> + <param name="track_input_h5" type="data" format="h5" label="Track file h5 format"/> + </xml> + <xml name="track_input_bed_macro"> + <param name="track_input_bed" type="data" format="bed" label="Track file bed format"/> + </xml> + <xml name="track_input_bedgraph_macro"> + <param name="track_input_bedgraph" type="data" format="bedgraph" label="Track file bedgraph format"/> + </xml> + <xml name="track_input_bigwig_macro"> + <param name="track_input_bigwig" type="data" format="bigwig" label="Track file bigwig format"/> + </xml> + <xml name="track_input_bedgraph_matrix_macro"> + <param name="track_input_bedgraph_matrix" type="data" format="bedgraph" label="Track file bigwig format"/> + </xml> + <xml name="track_input_tabular_macro"> + <param name="track_input_tabular" type="data" format="tabular" label="Track file tabular format"/> + </xml> + <xml name="plot_title"> + <param name="title" type="text" optional="true" label="Plot title"/> + </xml> + <xml name="spacer_macro"> + <param name="spacer_width" type="float" value="" optional="True" + label="Include spacer at the end of the track." help="Width of the spacer." /> + </xml> + <xml name="fontsize_macro"> + <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" /> + </xml> </macros>