Mercurial > repos > bgruening > hicexplorer_hiccomparematrices
diff hicCompareMatrices.xml @ 13:3ee5332bf57c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
| author | iuc |
|---|---|
| date | Wed, 18 Oct 2023 13:30:44 +0000 |
| parents | 80abd5e2922a |
| children | e03780179ee5 |
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--- a/hicCompareMatrices.xml Tue Jan 10 19:14:50 2023 +0000 +++ b/hicCompareMatrices.xml Wed Oct 18 13:30:44 2023 +0000 @@ -13,19 +13,21 @@ --matrices 'matrix1.$matrix1.ext' 'matrix2.$matrix2.ext' --operation $operation --outFileName 'matrix.$matrix1.ext' - + $noNorm && mv 'matrix.$matrix1.ext' matrix ]]> </command> <inputs> - <param name='matrix1' type="data" format="h5,cool" label="First matrix" /> - <param name='matrix2' type="data" format="h5,cool" label="Second matrix to compare against the first" /> + <param name="matrix1" type="data" format="h5,cool" label="First matrix" /> + <param name="matrix2" type="data" format="h5,cool" label="Second matrix to compare against the first" /> - <param name='operation' type='select' label="Operation to be used for the comparison"> - <option value='diff'>diff</option> + <param name="operation" type="select" label="Operation to be used for the comparison"> + <option value="diff">diff</option> <option value="ratio">ratio</option> <option value="log2ratio">log2ratio</option> </param> + <param name="noNorm" type="boolean" truevalue="--noNorm" falsevalue="" checked="False" label="No normalization" help="Do not apply normalisation before computing the operation" /> + </inputs> <outputs> <data name="outFileName" from_work_dir="matrix" format="cool" label="${tool.name} MATRIX on ${on_string}"> @@ -38,10 +40,10 @@ <test> <param name="matrix1" value="small_test_matrix.h5" /> <param name="matrix2" value="small_test_matrix.h5" /> - <param name="operation" value='log2ratio' /> + <param name="operation" value="log2ratio" /> <output name="outFileName" ftype="h5"> <assert_contents> - <has_h5_keys keys='intervals,matrix' /> + <has_h5_keys keys="intervals,matrix" /> </assert_contents> </output> </test>